Analysis of interatomic Contacts of Structural Units in PDB entry:
7FDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7FDV entry

There are 2 chains in PDB entry 7FDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 72	ARG 675
D	ARG 72	ARG 675

There are 52 helices in PDB entry 7FDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	123	133	Right-handed alpha
Helix 2	AA2	A	173	185	Right-handed alpha
Helix 3	AA3	A	191	194	Right-handed 310
Helix 4	AA4	A	195	205	Right-handed alpha
Helix 5	AA5	A	221	230	Right-handed alpha
Helix 6	AA6	A	252	264	Right-handed alpha
Helix 7	AA7	A	277	283	Right-handed alpha
Helix 8	AA8	A	303	311	Right-handed alpha
Helix 9	AA9	A	320	331	Right-handed alpha
Helix 10	AB1	A	404	418	Right-handed alpha
Helix 11	AB2	A	426	433	Right-handed alpha
Helix 12	AB3	A	433	441	Right-handed alpha
Helix 13	AB4	A	453	465	Right-handed alpha
Helix 14	AB5	A	470	475	Right-handed alpha
Helix 15	AB6	A	477	488	Right-handed alpha
Helix 16	AB7	A	498	503	Right-handed alpha
Helix 17	AB8	A	512	518	Right-handed alpha
Helix 18	AB9	A	520	525	Right-handed alpha
Helix 19	AC1	A	530	555	Right-handed alpha
Helix 20	AC2	A	561	572	Right-handed alpha
Helix 21	AC3	A	573	578	Right-handed alpha
Helix 22	AC4	A	590	594	Right-handed 310
Helix 23	AC5	A	595	600	Right-handed alpha
Helix 24	AC6	A	601	614	Right-handed alpha
Helix 25	AC7	A	648	664	Right-handed alpha
Helix 26	AC8	A	667	673	Right-handed alpha
Helix 27	AC9	D	123	133	Right-handed alpha
Helix 28	AD1	D	173	185	Right-handed alpha
Helix 29	AD2	D	191	194	Right-handed 310
Helix 30	AD3	D	195	205	Right-handed alpha
Helix 31	AD4	D	221	230	Right-handed alpha
Helix 32	AD5	D	252	264	Right-handed alpha
Helix 33	AD6	D	277	283	Right-handed alpha
Helix 34	AD7	D	303	311	Right-handed alpha
Helix 35	AD8	D	320	331	Right-handed alpha
Helix 36	AD9	D	404	418	Right-handed alpha
Helix 37	AE1	D	426	433	Right-handed alpha
Helix 38	AE2	D	433	441	Right-handed alpha
Helix 39	AE3	D	453	465	Right-handed alpha
Helix 40	AE4	D	470	475	Right-handed alpha
Helix 41	AE5	D	477	488	Right-handed alpha
Helix 42	AE6	D	498	503	Right-handed alpha
Helix 43	AE7	D	512	518	Right-handed alpha
Helix 44	AE8	D	520	525	Right-handed alpha
Helix 45	AE9	D	530	555	Right-handed alpha
Helix 46	AF1	D	561	572	Right-handed alpha
Helix 47	AF2	D	573	578	Right-handed alpha
Helix 48	AF3	D	590	594	Right-handed 310
Helix 49	AF4	D	595	600	Right-handed alpha
Helix 50	AF5	D	601	614	Right-handed alpha
Helix 51	AF6	D	648	664	Right-handed alpha
Helix 52	AF7	D	667	673	Right-handed alpha

There are 8 sheets in PDB entry 7FDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	77	80	anti-parallel
Strand 3	A	142	145	anti-parallel
Strand 4	A	148	149	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	98	102	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	115	117	parallel
Strand 3	A	286	290	parallel
Strand 4	A	295	300	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	239	240	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	77	80	anti-parallel
Strand 3	D	142	145	anti-parallel
Strand 4	D	148	149	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	98	102	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	272	first strand
Strand 2	D	115	117	parallel
Strand 3	D	286	290	parallel
Strand 4	D	295	300	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	239	240	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7FDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7FDV