Analysis of interatomic Contacts of Structural Units in PDB entry:
7FF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FF8 entry

There are 2 chains in PDB entry 7FF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9PHE 211
B
 ALA 18GLY 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 7FF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 17Right-handed alpha
Helix 2
AA2
A
74 78Right-handed 310
Helix 3
AA3
A
104 114Right-handed alpha
Helix 4
AA4
A
115 141Right-handed alpha
Helix 5
AA5
A
143 155Right-handed alpha
Helix 6
AA6
A
173 182Right-handed alpha
Helix 7
AA7
A
184 198Right-handed alpha
Helix 8
AA8
B
74 79Right-handed 310
Helix 9
AA9
B
104 110Right-handed alpha
Helix 10
AB1
B
116 140Right-handed alpha
Helix 11
AB2
B
143 155Right-handed alpha
Helix 12
AB3
B
173 182Right-handed alpha
Helix 13
AB4
B
184 199Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7FF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
97 103anti-parallel
Strand 3
A
40 46anti-parallel
Strand 4
A
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
90 93anti-parallel
Strand 3
A
49 54anti-parallel
Strand 4
A
60 66anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
167 170anti-parallel
Strand 3
A
207 210anti-parallel
Strand 4
A
201 204anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
97 103anti-parallel
Strand 3
B
40 46anti-parallel
Strand 4
B
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
90 93anti-parallel
Strand 3
B
49 54anti-parallel
Strand 4
B
60 66anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 164first strand
Strand 2
B
167 171anti-parallel
Strand 3
B
207 211anti-parallel
Strand 4
B
201 204anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il