Analysis of interatomic Contacts of Structural Units in PDB entry:
7FGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7FGF entry

There are 3 chains in PDB entry 7FGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1078	ILE 1559
B	LYS 1078	ILE 1559
C	LYS 1078	ILE 1559

There are 12 helices in PDB entry 7FGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1314	1318	Right-handed 310
Helix 2	AA2	A	1377	1388	Right-handed alpha
Helix 3	AA3	A	1390	1394	Right-handed alpha
Helix 4	AA4	A	1524	1526	Right-handed 310
Helix 5	AA5	B	1314	1318	Right-handed 310
Helix 6	AA6	B	1377	1388	Right-handed alpha
Helix 7	AA7	B	1390	1394	Right-handed alpha
Helix 8	AA8	B	1524	1526	Right-handed 310
Helix 9	AA9	C	1314	1318	Right-handed 310
Helix 10	AB1	C	1377	1388	Right-handed alpha
Helix 11	AB2	C	1390	1394	Right-handed alpha
Helix 12	AB3	C	1524	1526	Right-handed 310

There are 24 sheets in PDB entry 7FGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1245	1248	first strand
Strand 2	A	1220	1237	anti-parallel
Strand 3	A	1135	1153	anti-parallel
Strand 4	A	1409	1417	anti-parallel
Strand 5	A	1395	1404	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1297	1300	first strand
Strand 2	A	1277	1282	anti-parallel
Strand 3	A	1220	1237	anti-parallel
Strand 4	A	1135	1153	anti-parallel
Strand 5	A	1116	1118	anti-parallel
Strand 6	A	1080	1082	parallel
Strand 7	A	1476	1478	parallel
Strand 8	A	1494	1496	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1086	1092	first strand
Strand 2	A	1103	1111	anti-parallel
Strand 3	A	1423	1430	anti-parallel
Strand 4	A	1260	1264	anti-parallel
Strand 5	A	1254	1256	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1157	1163	first strand
Strand 2	A	1205	1212	anti-parallel
Strand 3	A	1181	1186	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1319	1320	first strand
Strand 2	A	1347	1348	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1355	1359	first strand
Strand 2	A	1367	1371	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1487	1489	first strand
Strand 2	A	1505	1511	anti-parallel
Strand 3	A	1462	1469	anti-parallel
Strand 4	A	1446	1455	anti-parallel
Strand 5	A	1544	1545	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1480	1482	first strand
Strand 2	A	1517	1522	anti-parallel
Strand 3	A	1537	1541	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1245	1248	first strand
Strand 2	B	1220	1237	anti-parallel
Strand 3	B	1135	1153	anti-parallel
Strand 4	B	1409	1417	anti-parallel
Strand 5	B	1395	1404	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1297	1300	first strand
Strand 2	B	1277	1282	anti-parallel
Strand 3	B	1220	1237	anti-parallel
Strand 4	B	1135	1153	anti-parallel
Strand 5	B	1116	1118	anti-parallel
Strand 6	B	1080	1082	parallel
Strand 7	B	1476	1478	parallel
Strand 8	B	1494	1496	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1086	1092	first strand
Strand 2	B	1103	1111	anti-parallel
Strand 3	B	1423	1430	anti-parallel
Strand 4	B	1260	1264	anti-parallel
Strand 5	B	1254	1256	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1157	1163	first strand
Strand 2	B	1205	1212	anti-parallel
Strand 3	B	1181	1186	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1319	1320	first strand
Strand 2	B	1347	1348	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1355	1359	first strand
Strand 2	B	1367	1371	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1487	1489	first strand
Strand 2	B	1505	1511	anti-parallel
Strand 3	B	1462	1469	anti-parallel
Strand 4	B	1446	1455	anti-parallel
Strand 5	B	1544	1545	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1480	1482	first strand
Strand 2	B	1517	1522	anti-parallel
Strand 3	B	1537	1541	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1245	1248	first strand
Strand 2	C	1220	1237	anti-parallel
Strand 3	C	1135	1153	anti-parallel
Strand 4	C	1409	1417	anti-parallel
Strand 5	C	1395	1404	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1297	1300	first strand
Strand 2	C	1277	1282	anti-parallel
Strand 3	C	1220	1237	anti-parallel
Strand 4	C	1135	1153	anti-parallel
Strand 5	C	1116	1118	anti-parallel
Strand 6	C	1080	1082	parallel
Strand 7	C	1476	1478	parallel
Strand 8	C	1494	1496	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1086	1092	first strand
Strand 2	C	1103	1111	anti-parallel
Strand 3	C	1423	1430	anti-parallel
Strand 4	C	1260	1264	anti-parallel
Strand 5	C	1254	1256	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1157	1163	first strand
Strand 2	C	1205	1212	anti-parallel
Strand 3	C	1181	1186	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1319	1320	first strand
Strand 2	C	1347	1348	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1355	1359	first strand
Strand 2	C	1367	1371	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1487	1489	first strand
Strand 2	C	1505	1511	anti-parallel
Strand 3	C	1462	1469	anti-parallel
Strand 4	C	1446	1455	anti-parallel
Strand 5	C	1544	1545	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1480	1482	first strand
Strand 2	C	1517	1522	anti-parallel
Strand 3	C	1537	1541	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7FGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7FGF