Analysis of interatomic Contacts of Structural Units in PDB entry:
7FII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7FII entry

There are 6 chains in PDB entry 7FII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	LEU 361
B	GLU 3	ASN 340
G	THR 6	ARG 62
R	GLU 32	CYS 644
X	GLN 5	SER 92
Y	LYS 2	ASP 111

There are 35 helices in PDB entry 7FII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	42	44	Right-handed 310
Helix 3	AA3	A	45	55	Right-handed alpha
Helix 4	AA4	A	62	91	Right-handed alpha
Helix 5	AA5	A	99	113	Right-handed alpha
Helix 6	AA6	A	120	133	Right-handed alpha
Helix 7	AA7	A	133	143	Right-handed alpha
Helix 8	AA8	A	151	163	Right-handed alpha
Helix 9	AA9	A	170	179	Right-handed alpha
Helix 10	AB1	A	207	212	Right-handed alpha
Helix 11	AB2	A	213	218	Right-handed 310
Helix 12	AB3	A	232	245	Right-handed alpha
Helix 13	AB4	A	260	270	Right-handed alpha
Helix 14	AB5	A	274	279	Right-handed alpha
Helix 15	AB6	A	280	283	Right-handed 310
Helix 16	AB7	A	298	317	Right-handed alpha
Helix 17	AB8	A	337	358	Right-handed alpha
Helix 18	AB9	B	4	26	Right-handed alpha
Helix 19	AC1	B	29	35	Right-handed alpha
Helix 20	AC2	G	7	24	Right-handed alpha
Helix 21	AC3	G	29	46	Right-handed alpha
Helix 22	AC4	R	261	265	Right-handed 310
Helix 23	AC5	R	275	280	Right-handed alpha
Helix 24	AC6	R	361	386	Right-handed alpha
Helix 25	AC7	R	392	422	Right-handed alpha
Helix 26	AC8	R	425	436	Right-handed alpha
Helix 27	AC9	R	436	470	Right-handed alpha
Helix 28	AD1	R	479	504	Right-handed alpha
Helix 29	AD2	R	521	554	Right-handed alpha
Helix 30	AD3	R	560	594	Right-handed alpha
Helix 31	AD4	R	600	611	Right-handed alpha
Helix 32	AD5	R	613	624	Right-handed alpha
Helix 33	AD6	R	627	642	Right-handed alpha
Helix 34	AD7	X	40	46	Right-handed alpha
Helix 35	AD8	X	71	73	Right-handed 310

There are 19 sheets in PDB entry 7FII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	195	201	parallel
Strand 3	A	184	190	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	195	201	parallel
Strand 3	A	36	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	254	259	parallel
Strand 6	A	326	330	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	135	138	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	179	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	53	54	first strand
Strand 2	R	77	80	parallel
Strand 3	R	102	105	parallel
Strand 4	R	127	130	parallel
Strand 5	R	151	155	parallel
Strand 6	R	177	180	parallel
Strand 7	R	199	203	parallel
Strand 8	R	226	228	parallel
Strand 9	R	247	250	parallel
Strand 10	R	270	273	parallel
Strand 11	R	342	344	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	63	64	first strand
Strand 2	R	88	89	parallel
Strand 3	R	113	114	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	94	95	first strand
Strand 2	R	119	120	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	195	197	first strand
Strand 2	R	220	221	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	11	14	first strand
Strand 2	X	26	30	anti-parallel
Strand 3	Y	40	41	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	35	37	first strand
Strand 2	X	54	56	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	60	62	first strand
Strand 2	X	82	84	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	65	69	first strand
Strand 2	X	75	79	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	10	18	first strand
Strand 2	Y	27	35	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	56	68	first strand
Strand 2	Y	79	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7FII

Analysis of interatomic Contacts of Structural Units in PDB entry:
7FII