Analysis of interatomic Contacts of Structural Units in PDB entry:
7FIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FIJ entry

There is 1 chain in PDB entry 7FIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 ASP 39CYS 644
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7FIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
R
241 245Right-handed 310
Helix 2
AA2
R
278 283Right-handed alpha
Helix 3
AA3
R
362 387Right-handed alpha
Helix 4
AA4
R
392 420Right-handed alpha
Helix 5
AA5
R
429 435Right-handed alpha
Helix 6
AA6
R
437 468Right-handed alpha
Helix 7
AA7
R
470 477Right-handed 310
Helix 8
AA8
R
479 504Right-handed alpha
Helix 9
AA9
R
521 552Right-handed alpha
Helix 10
AB1
R
560 595Right-handed alpha
Helix 11
AB2
R
603 610Right-handed alpha
Helix 12
AB3
R
613 624Right-handed alpha
Helix 13
AB4
R
627 641Right-handed alpha
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There are 4 sheets in PDB entry 7FIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
40 41first strand
Strand 2
R
44 45anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
102 105first strand
Strand 2
R
127 131parallel
Strand 3
R
152 156parallel
Strand 4
R
177 180parallel
Strand 5
R
199 203parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
163 164first strand
Strand 2
R
188 189parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
226 228first strand
Strand 2
R
247 250parallel
Strand 3
R
270 273parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il