Analysis of interatomic Contacts of Structural Units in PDB entry:
7FIM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7FIM entry

There are 8 chains in PDB entry 7FIM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	GLN 3	VAL 128
B	LEU 9	ASN 345
A	GLN 12	LEU 394
R	ALA 28	GLU 423
G	THR 6	ARG 62
P	TYR 1	TYR 1
P	GLU 3	ILE 12
P	LEU 14	GLY 29

There are 32 helices in PDB entry 7FIM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	N	63	67	Right-handed 310
Helix 2	AA2	N	89	93	Right-handed 310
Helix 3	AA3	B	10	30	Right-handed alpha
Helix 4	AA4	B	34	39	Right-handed alpha
Helix 5	AA5	B	133	137	Right-handed 310
Helix 6	AA6	A	13	38	Right-handed alpha
Helix 7	AA7	A	52	64	Right-handed alpha
Helix 8	AA8	A	233	237	Right-handed 310
Helix 9	AA9	A	265	278	Right-handed alpha
Helix 10	AB1	A	293	304	Right-handed alpha
Helix 11	AB2	A	312	316	Right-handed 310
Helix 12	AB3	A	331	352	Right-handed alpha
Helix 13	AB4	A	371	391	Right-handed alpha
Helix 14	AB5	R	31	53	Right-handed alpha
Helix 15	AB6	R	139	169	Right-handed alpha
Helix 16	AB7	R	174	205	Right-handed alpha
Helix 17	AB8	R	206	215	Right-handed alpha
Helix 18	AB9	R	223	239	Right-handed alpha
Helix 19	AC1	R	242	256	Right-handed alpha
Helix 20	AC2	R	261	275	Right-handed alpha
Helix 21	AC3	R	276	279	Right-handed 310
Helix 22	AC4	R	281	291	Right-handed alpha
Helix 23	AC5	R	294	298	Right-handed 310
Helix 24	AC6	R	306	336	Right-handed alpha
Helix 25	AC7	R	346	361	Right-handed alpha
Helix 26	AC8	R	362	368	Right-handed 310
Helix 27	AC9	R	377	387	Right-handed alpha
Helix 28	AD1	R	393	404	Right-handed alpha
Helix 29	AD2	R	406	422	Right-handed alpha
Helix 30	AD3	G	7	23	Right-handed alpha
Helix 31	AD4	G	29	44	Right-handed alpha
Helix 32	AD5	P	2	29	Right-handed alpha

There are 11 sheets in PDB entry 7FIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	8	first strand
Strand 2	N	21	27	anti-parallel
Strand 3	N	80	84	anti-parallel
Strand 4	N	71	75	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	47	53	first strand
Strand 2	N	36	41	anti-parallel
Strand 3	N	94	100	anti-parallel
Strand 4	N	124	126	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	57	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	93	99	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	116	120	anti-parallel
Strand 3	B	125	130	anti-parallel
Strand 4	B	140	145	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	162	166	anti-parallel
Strand 3	B	170	173	anti-parallel
Strand 4	B	183	186	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	225	227	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	254	259	anti-parallel
Strand 4	B	265	270	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	283	first strand
Strand 2	B	289	292	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	B	311	313	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	45	parallel
Strand 4	A	243	248	parallel
Strand 5	A	286	291	parallel
Strand 6	A	359	363	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	82	84	first strand
Strand 2	R	99	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7FIM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7FIM