Analysis of interatomic Contacts of Structural Units in PDB entry:
7FJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7FJD entry

There are 8 chains in PDB entry 7FJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	GLN 22	LYS 54
b	LEU 26	LYS 54
d	PHE 22	HIS 128
e	GLN 33	ARG 155
f	GLN 33	LYS 156
g	LYS 26	GLY 138
m	GLN 28	SER 273
n	GLY 22	LYS 308

There are 18 helices in PDB entry 7FJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	29	54	Right-handed alpha
Helix 2	AA2	b	29	54	Right-handed alpha
Helix 3	AA3	d	64	66	Right-handed 310
Helix 4	AA4	d	76	80	Right-handed 310
Helix 5	AA5	d	102	126	Right-handed alpha
Helix 6	AA6	e	104	108	Right-handed 310
Helix 7	AA7	e	126	154	Right-handed alpha
Helix 8	AA8	f	104	108	Right-handed 310
Helix 9	AA9	f	128	142	Right-handed alpha
Helix 10	AB1	f	143	154	Right-handed alpha
Helix 11	AB2	g	78	80	Right-handed 310
Helix 12	AB3	g	111	138	Right-handed alpha
Helix 13	AB4	m	231	235	Right-handed 310
Helix 14	AB5	m	240	273	Right-handed alpha
Helix 15	AB6	n	101	105	Right-handed 310
Helix 16	AB7	n	150	157	Right-handed alpha
Helix 17	AB8	n	217	221	Right-handed alpha
Helix 18	AB9	n	269	308	Right-handed alpha

There are 18 sheets in PDB entry 7FJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	26	27	first strand
Strand 2	d	32	36	anti-parallel
Strand 3	d	57	62	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	42	46	first strand
Strand 2	d	68	72	anti-parallel
Strand 3	d	85	91	anti-parallel
Strand 4	e	111	116	parallel
Strand 5	e	95	100	anti-parallel
Strand 6	e	57	61	anti-parallel
Strand 7	e	65	66	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	97	98	first strand
Strand 2	e	122	123	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	37	40	first strand
Strand 2	e	44	48	anti-parallel
Strand 3	e	81	85	anti-parallel
Strand 4	e	75	77	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	37	41	first strand
Strand 2	f	44	48	anti-parallel
Strand 3	f	81	85	anti-parallel
Strand 4	f	75	76	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	57	61	first strand
Strand 2	f	94	100	anti-parallel
Strand 3	f	111	117	anti-parallel
Strand 4	g	97	103	parallel
Strand 5	g	82	88	anti-parallel
Strand 6	g	53	57	anti-parallel
Strand 7	g	60	65	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	122	124	first strand
Strand 2	g	107	109	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	31	34	first strand
Strand 2	g	41	46	anti-parallel
Strand 3	g	71	76	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	33	36	first strand
Strand 2	m	126	131	parallel
Strand 3	m	108	114	anti-parallel
Strand 4	m	54	60	anti-parallel
Strand 5	m	67	72	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	33	36	first strand
Strand 2	m	126	131	parallel
Strand 3	m	108	114	anti-parallel
Strand 4	m	121	122	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	41	46	first strand
Strand 2	m	93	98	anti-parallel
Strand 3	m	83	88	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	140	143	first strand
Strand 2	m	153	158	anti-parallel
Strand 3	m	195	198	anti-parallel
Strand 4	m	174	176	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	180	184	first strand
Strand 2	m	189	193	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	24	26	first strand
Strand 2	n	38	43	anti-parallel
Strand 3	n	95	97	anti-parallel
Strand 4	n	83	85	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	29	33	first strand
Strand 2	n	129	133	parallel
Strand 3	n	106	109	anti-parallel
Strand 4	n	51	56	anti-parallel
Strand 5	n	63	70	anti-parallel
Strand 6	n	73	76	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	143	147	first strand
Strand 2	n	159	169	anti-parallel
Strand 3	n	207	216	anti-parallel
Strand 4	n	189	191	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	143	147	first strand
Strand 2	n	159	169	anti-parallel
Strand 3	n	207	216	anti-parallel
Strand 4	n	196	197	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	183	184	first strand
Strand 2	n	174	180	anti-parallel
Strand 3	n	226	233	anti-parallel
Strand 4	n	252	259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7FJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7FJD