Analysis of interatomic Contacts of Structural Units in PDB entry:
7FJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7FJF entry

There are 8 chains in PDB entry 7FJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
b	LEU 26	LYS 54
d	PHE 22	HIS 128
e	GLN 33	ARG 155
f	GLN 33	LYS 156
g	LYS 26	GLY 138
m	GLN 28	SER 273
n	GLY 22	LYS 308
a	GLN 22	LYS 54

There are 17 helices in PDB entry 7FJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	b	29	53	Right-handed alpha
Helix 2	AA2	d	64	66	Right-handed 310
Helix 3	AA3	d	102	124	Right-handed alpha
Helix 4	AA4	e	104	108	Right-handed 310
Helix 5	AA5	e	127	154	Right-handed alpha
Helix 6	AA6	f	104	108	Right-handed 310
Helix 7	AA7	f	128	154	Right-handed alpha
Helix 8	AA8	g	78	80	Right-handed 310
Helix 9	AA9	g	111	138	Right-handed alpha
Helix 10	AB1	m	102	106	Right-handed 310
Helix 11	AB2	m	231	235	Right-handed 310
Helix 12	AB3	m	240	272	Right-handed alpha
Helix 13	AB4	n	101	105	Right-handed 310
Helix 14	AB5	n	150	158	Right-handed alpha
Helix 15	AB6	n	217	221	Right-handed alpha
Helix 16	AB7	n	270	308	Right-handed alpha
Helix 17	AB8	a	29	54	Right-handed alpha

There are 21 sheets in PDB entry 7FJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	26	28	first strand
Strand 2	d	32	36	anti-parallel
Strand 3	d	57	62	anti-parallel
Strand 4	d	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	42	46	first strand
Strand 2	d	69	74	anti-parallel
Strand 3	d	83	91	anti-parallel
Strand 4	e	111	116	parallel
Strand 5	e	95	100	anti-parallel
Strand 6	e	57	61	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	96	98	first strand
Strand 2	e	122	124	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	39	40	first strand
Strand 2	e	44	48	anti-parallel
Strand 3	e	81	85	anti-parallel
Strand 4	e	75	77	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	37	40	first strand
Strand 2	f	44	48	anti-parallel
Strand 3	f	83	85	anti-parallel
Strand 4	f	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	65	66	first strand
Strand 2	f	57	61	anti-parallel
Strand 3	f	96	100	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	111	117	first strand
Strand 2	g	97	103	parallel
Strand 3	g	82	85	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	122	124	first strand
Strand 2	g	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	31	34	first strand
Strand 2	g	41	46	anti-parallel
Strand 3	g	71	76	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	60	65	first strand
Strand 2	g	53	57	anti-parallel
Strand 3	g	87	88	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	33	36	first strand
Strand 2	m	126	131	parallel
Strand 3	m	108	114	anti-parallel
Strand 4	m	54	60	anti-parallel
Strand 5	m	68	72	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	33	36	first strand
Strand 2	m	126	131	parallel
Strand 3	m	108	114	anti-parallel
Strand 4	m	121	122	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	40	46	first strand
Strand 2	m	93	99	anti-parallel
Strand 3	m	83	88	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	141	143	first strand
Strand 2	m	153	157	anti-parallel
Strand 3	m	195	198	anti-parallel
Strand 4	m	174	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	180	184	first strand
Strand 2	m	189	193	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	29	33	first strand
Strand 2	n	129	133	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	38	40	first strand
Strand 2	n	95	97	anti-parallel
Strand 3	n	83	85	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	73	76	first strand
Strand 2	n	61	70	anti-parallel
Strand 3	n	51	57	anti-parallel
Strand 4	n	107	112	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	143	147	first strand
Strand 2	n	159	169	anti-parallel
Strand 3	n	207	216	anti-parallel
Strand 4	n	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	143	147	first strand
Strand 2	n	159	169	anti-parallel
Strand 3	n	207	216	anti-parallel
Strand 4	n	196	197	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	183	184	first strand
Strand 2	n	174	180	anti-parallel
Strand 3	n	226	233	anti-parallel
Strand 4	n	252	259	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7FJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7FJF