Analysis of interatomic Contacts of Structural Units in PDB entry:
7FNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FNT entry

There are 2 chains in PDB entry 7FNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1833VAL 2069
B
 MET 1LEU 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7FNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1836 1845Right-handed 310
Helix 2
AA2
A
1895 1900Right-handed 310
Helix 3
AA3
A
1904 1924Right-handed alpha
Helix 4
AA4
A
1925 1929Right-handed 310
Helix 5
AA5
A
1937 1939Right-handed 310
Helix 6
AA6
A
1940 1948Right-handed alpha
Helix 7
AA7
A
1964 1970Right-handed 310
Helix 8
AA8
A
1971 1981Right-handed alpha
Helix 9
AA9
A
1994 1998Right-handed 310
Helix 10
AB1
A
2000 2018Right-handed alpha
Helix 11
AB2
A
2018 2028Right-handed alpha
Helix 12
AB3
A
2044 2068Right-handed alpha
Helix 13
AB4
B
61 65Right-handed 310
Helix 14
AB5
B
85 99Right-handed alpha
Helix 15
AB6
B
112 119Right-handed alpha
Helix 16
AB7
B
122 130Right-handed alpha
Helix 17
AB8
B
148 152Right-handed 310
Helix 18
AB9
B
171 175Right-handed 310
Helix 19
AC1
B
193 200Right-handed alpha
Helix 20
AC2
B
201 207Right-handed alpha
Helix 21
AC3
B
216 235Right-handed alpha
Helix 22
AC4
B
236 252Right-handed alpha
Helix 23
AC5
B
257 275Right-handed alpha
Helix 24
AC6
B
276 278Right-handed 310
Helix 25
AC7
B
279 284Right-handed alpha
Helix 26
AC8
B
285 295Right-handed alpha
Helix 27
AC9
B
302 313Right-handed alpha
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There are 5 sheets in PDB entry 7FNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1955 1957first strand
Strand 2
A
1932 1935parallel
Strand 3
A
1849 1853parallel
Strand 4
A
1877 1882anti-parallel
Strand 5
A
1888 1894anti-parallel
Strand 6
A
1985 1990anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1859 1864first strand
Strand 2
A
1870 1875anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
32 36anti-parallel
Strand 3
B
103 104parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
13 17anti-parallel
Strand 3
B
42 48anti-parallel
Strand 4
B
56 60anti-parallel
Strand 5
B
138 141anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
77 82anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il