Analysis of interatomic Contacts of Structural Units in PDB entry:
7FUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FUD entry

There are 2 chains in PDB entry 7FUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 161ASP 520
B
 GLY 161ASP 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7FUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 177Right-handed alpha
Helix 2
AA2
A
181 199Right-handed alpha
Helix 3
AA3
A
200 204Right-handed 310
Helix 4
AA4
A
262 264Right-handed 310
Helix 5
AA5
A
272 289Right-handed alpha
Helix 6
AA6
A
331 335Right-handed 310
Helix 7
AA7
A
345 354Right-handed alpha
Helix 8
AA8
A
381 388Right-handed alpha
Helix 9
AA9
A
399 403Right-handed 310
Helix 10
AB1
A
405 424Right-handed alpha
Helix 11
AB2
A
434 449Right-handed alpha
Helix 12
AB3
A
451 458Right-handed 310
Helix 13
AB4
A
459 478Right-handed alpha
Helix 14
AB5
A
497 513Right-handed alpha
Helix 15
AB6
A
514 515Right-handed 310
Helix 16
AB7
A
516 520Right-handed 310
Helix 17
AB8
B
162 178Right-handed alpha
Helix 18
AB9
B
181 200Right-handed alpha
Helix 19
AC1
B
201 204Right-handed 310
Helix 20
AC2
B
262 264Right-handed 310
Helix 21
AC3
B
272 290Right-handed alpha
Helix 22
AC4
B
331 335Right-handed 310
Helix 23
AC5
B
345 355Right-handed alpha
Helix 24
AC6
B
381 388Right-handed alpha
Helix 25
AC7
B
399 403Right-handed 310
Helix 26
AC8
B
405 424Right-handed alpha
Helix 27
AC9
B
434 449Right-handed alpha
Helix 28
AD1
B
451 458Right-handed 310
Helix 29
AD2
B
459 478Right-handed alpha
Helix 30
AD3
B
497 514Right-handed alpha
Helix 31
AD4
B
515 520Right-handed 310
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There are 6 sheets in PDB entry 7FUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
357 361anti-parallel
Strand 5
A
375 378anti-parallel
Strand 6
A
248 253anti-parallel
Strand 7
A
237 241anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
308 312anti-parallel
Strand 5
A
296 298anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
270 271anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
225 233anti-parallel
Strand 3
B
316 326parallel
Strand 4
B
357 361anti-parallel
Strand 5
B
375 378anti-parallel
Strand 6
B
248 252anti-parallel
Strand 7
B
238 241anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
225 233anti-parallel
Strand 3
B
316 326parallel
Strand 4
B
308 312anti-parallel
Strand 5
B
296 299anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
270 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il