Analysis of interatomic Contacts of Structural Units in PDB entry:
7FUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FUP entry

There is 1 chain in PDB entry 7FUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 160ASP 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 7FUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 175Right-handed alpha
Helix 2
AA2
A
178 199Right-handed alpha
Helix 3
AA3
A
200 204Right-handed 310
Helix 4
AA4
A
256 264Right-handed 310
Helix 5
AA5
A
272 289Right-handed alpha
Helix 6
AA6
A
331 335Right-handed 310
Helix 7
AA7
A
345 353Right-handed alpha
Helix 8
AA8
A
379 388Right-handed alpha
Helix 9
AA9
A
399 403Right-handed 310
Helix 10
AB1
A
405 424Right-handed alpha
Helix 11
AB2
A
434 449Right-handed alpha
Helix 12
AB3
A
451 458Right-handed 310
Helix 13
AB4
A
459 478Right-handed alpha
Helix 14
AB5
A
497 513Right-handed alpha
Helix 15
AB6
A
514 515Right-handed 310
Helix 16
AB7
A
516 520Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 7FUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
357 361anti-parallel
Strand 5
A
375 378anti-parallel
Strand 6
A
248 253anti-parallel
Strand 7
A
237 241anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
308 312anti-parallel
Strand 5
A
294 296anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
270 271anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il