Analysis of interatomic Contacts of Structural Units in PDB entry:
7FYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FYW entry

There are 4 chains in PDB entry 7FYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3VAL 133
B
 GLY -3VAL 133
C
 GLY -3VAL 133
D
 GLY -3VAL 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7FYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 7Right-handed 310
Helix 2
AA2
A
17 26Right-handed alpha
Helix 3
AA3
A
28 38Right-handed alpha
Helix 4
AA4
B
2 7Right-handed 310
Helix 5
AA5
B
17 26Right-handed alpha
Helix 6
AA6
B
29 37Right-handed alpha
Helix 7
AA7
C
4 7Right-handed 310
Helix 8
AA8
C
17 25Right-handed alpha
Helix 9
AA9
C
28 38Right-handed alpha
Helix 10
AB1
D
2 6Right-handed 310
Helix 11
AB2
D
17 26Right-handed alpha
Helix 12
AB3
D
30 38Right-handed alpha
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There are 5 sheets in PDB entry 7FYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-1 2first strand
Strand 2
D
60 67anti-parallel
Strand 3
D
50 57anti-parallel
Strand 4
D
41 47anti-parallel
Strand 5
D
8 9anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 67first strand
Strand 2
A
50 57anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
8 16anti-parallel
Strand 5
A
124 132anti-parallel
Strand 6
A
114 121anti-parallel
Strand 7
A
102 111anti-parallel
Strand 8
A
92 99anti-parallel
Strand 9
A
81 89anti-parallel
Strand 10
A
72 75anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
81 89anti-parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
102 111anti-parallel
Strand 5
B
114 121anti-parallel
Strand 6
B
124 132anti-parallel
Strand 7
B
8 14anti-parallel
Strand 8
B
41 47anti-parallel
Strand 9
B
50 56anti-parallel
Strand 10
B
60 67anti-parallel
Strand 11
C
-1 2anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 67first strand
Strand 2
C
50 57anti-parallel
Strand 3
C
41 47anti-parallel
Strand 4
C
8 16anti-parallel
Strand 5
C
124 133anti-parallel
Strand 6
C
114 121anti-parallel
Strand 7
C
102 111anti-parallel
Strand 8
C
92 99anti-parallel
Strand 9
C
81 89anti-parallel
Strand 10
C
72 75anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
124 130anti-parallel
Strand 3
D
114 121anti-parallel
Strand 4
D
102 111anti-parallel
Strand 5
D
92 99anti-parallel
Strand 6
D
81 89anti-parallel
Strand 7
D
72 75anti-parallel
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