Analysis of interatomic Contacts of Structural Units in PDB entry:
7GPB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7GPB entry

There are 4 chains in PDB entry 7GPB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	PRO 837
B	ARG 10	PRO 837
C	ARG 10	PRO 837
D	ARG 10	PRO 837

There are136 helices in PDB entry 7GPB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1A	A	23	38	Right-handed alpha
Helix 2	2A	A	47	78	Right-handed alpha
Helix 3	3A	A	94	102	Right-handed alpha
Helix 4	4A	A	104	115	Right-handed alpha
Helix 5	5A	A	118	124	Right-handed alpha
Helix 6	6A	A	134	150	Right-handed alpha
Helix 7	7A	A	261	274	Right-handed alpha
Helix 8	8A	A	289	314	Right-handed alpha
Helix 9	8BA	A	328	333	Right-handed alpha
Helix 10	9A	A	344	355	Right-handed alpha
Helix 11	10A	A	360	372	Right-handed alpha
Helix 12	11A	A	388	396	Right-handed alpha
Helix 13	12A	A	396	418	Right-handed alpha
Helix 14	13A	A	420	429	Right-handed alpha
Helix 15	14A	A	440	448	Right-handed alpha
Helix 16	15A	A	456	466	Right-handed alpha
Helix 17	16A	A	468	475	Right-handed alpha
Helix 18	PIA	A	488	495	Right-handed pi
Helix 19	16A	A	496	508	Right-handed alpha
Helix 20	TAA	A	509	514	Right-handed 310
Helix 21	TBA	A	514	525	Right-handed 310
Helix 22	17A	A	527	553	Right-handed alpha
Helix 23	18A	A	575	593	Right-handed alpha
Helix 24	19A	A	613	631	Right-handed alpha
Helix 25	20A	A	649	657	Right-handed alpha
Helix 26	21A	A	676	684	Right-handed alpha
Helix 27	22A	A	695	704	Right-handed alpha
Helix 28	23A	A	714	725	Right-handed alpha
Helix 29	24A	A	728	735	Right-handed alpha
Helix 30	25A	A	735	747	Right-handed alpha
Helix 31	26A	A	758	768	Right-handed alpha
Helix 32	27A	A	776	792	Right-handed alpha
Helix 33	28A	A	793	806	Right-handed alpha
Helix 34	29A	A	812	825	Right-handed alpha
Helix 35	1B	B	23	38	Right-handed alpha
Helix 36	2B	B	47	78	Right-handed alpha
Helix 37	3B	B	94	102	Right-handed alpha
Helix 38	4B	B	104	115	Right-handed alpha
Helix 39	5B	B	118	124	Right-handed alpha
Helix 40	6B	B	134	150	Right-handed alpha
Helix 41	7B	B	261	274	Right-handed alpha
Helix 42	8B	B	289	314	Right-handed alpha
Helix 43	8BB	B	328	333	Right-handed alpha
Helix 44	9B	B	344	355	Right-handed alpha
Helix 45	10B	B	360	372	Right-handed alpha
Helix 46	11B	B	388	396	Right-handed alpha
Helix 47	12B	B	396	418	Right-handed alpha
Helix 48	13B	B	420	429	Right-handed alpha
Helix 49	14B	B	440	448	Right-handed alpha
Helix 50	15B	B	456	466	Right-handed alpha
Helix 51	16B	B	468	475	Right-handed alpha
Helix 52	PIB	B	488	495	Right-handed pi
Helix 53	16B	B	496	508	Right-handed alpha
Helix 54	TAB	B	509	514	Right-handed 310
Helix 55	TBB	B	514	525	Right-handed 310
Helix 56	17B	B	527	553	Right-handed alpha
Helix 57	18B	B	575	593	Right-handed alpha
Helix 58	19B	B	613	631	Right-handed alpha
Helix 59	20B	B	649	657	Right-handed alpha
Helix 60	21B	B	676	684	Right-handed alpha
Helix 61	22B	B	695	704	Right-handed alpha
Helix 62	23B	B	714	725	Right-handed alpha
Helix 63	24B	B	728	735	Right-handed alpha
Helix 64	25B	B	735	747	Right-handed alpha
Helix 65	26B	B	758	768	Right-handed alpha
Helix 66	27B	B	776	792	Right-handed alpha
Helix 67	28B	B	793	806	Right-handed alpha
Helix 68	29B	B	812	825	Right-handed alpha
Helix 69	1C	C	23	38	Right-handed alpha
Helix 70	2C	C	47	78	Right-handed alpha
Helix 71	3C	C	94	102	Right-handed alpha
Helix 72	4C	C	104	115	Right-handed alpha
Helix 73	5C	C	118	124	Right-handed alpha
Helix 74	6C	C	134	150	Right-handed alpha
Helix 75	7C	C	261	274	Right-handed alpha
Helix 76	8C	C	289	314	Right-handed alpha
Helix 77	8BC	C	328	333	Right-handed alpha
Helix 78	9C	C	344	355	Right-handed alpha
Helix 79	10C	C	360	372	Right-handed alpha
Helix 80	11C	C	388	396	Right-handed alpha
Helix 81	12C	C	396	418	Right-handed alpha
Helix 82	13C	C	420	429	Right-handed alpha
Helix 83	14C	C	440	448	Right-handed alpha
Helix 84	15C	C	456	466	Right-handed alpha
Helix 85	16C	C	468	475	Right-handed alpha
Helix 86	PIC	C	488	495	Right-handed pi
Helix 87	16C	C	496	508	Right-handed alpha
Helix 88	TAC	C	509	514	Right-handed 310
Helix 89	TBC	C	514	525	Right-handed 310
Helix 90	17C	C	527	553	Right-handed alpha
Helix 91	18C	C	575	593	Right-handed alpha
Helix 92	19C	C	613	631	Right-handed alpha
Helix 93	20C	C	649	657	Right-handed alpha
Helix 94	21C	C	676	684	Right-handed alpha
Helix 95	22C	C	695	704	Right-handed alpha
Helix 96	23C	C	714	725	Right-handed alpha
Helix 97	24C	C	728	735	Right-handed alpha
Helix 98	25C	C	735	747	Right-handed alpha
Helix 99	26C	C	758	768	Right-handed alpha
Helix 100	27C	C	776	792	Right-handed alpha
Helix 101	28C	C	793	806	Right-handed alpha
Helix 102	29C	C	812	825	Right-handed alpha
Helix 103	1D	D	23	38	Right-handed alpha
Helix 104	2D	D	47	78	Right-handed alpha
Helix 105	3D	D	94	102	Right-handed alpha
Helix 106	4D	D	104	115	Right-handed alpha
Helix 107	5D	D	118	124	Right-handed alpha
Helix 108	6D	D	134	150	Right-handed alpha
Helix 109	7D	D	261	274	Right-handed alpha
Helix 110	8D	D	289	314	Right-handed alpha
Helix 111	8BD	D	328	333	Right-handed alpha
Helix 112	9D	D	344	355	Right-handed alpha
Helix 113	10D	D	360	372	Right-handed alpha
Helix 114	11D	D	388	396	Right-handed alpha
Helix 115	12D	D	396	418	Right-handed alpha
Helix 116	13D	D	420	429	Right-handed alpha
Helix 117	14D	D	440	448	Right-handed alpha
Helix 118	15D	D	456	466	Right-handed alpha
Helix 119	16D	D	468	475	Right-handed alpha
Helix 120	PID	D	488	495	Right-handed pi
Helix 121	16D	D	496	508	Right-handed alpha
Helix 122	TAD	D	509	514	Right-handed 310
Helix 123	TBD	D	514	525	Right-handed 310
Helix 124	17D	D	527	553	Right-handed alpha
Helix 125	18D	D	575	593	Right-handed alpha
Helix 126	19D	D	613	631	Right-handed alpha
Helix 127	20D	D	649	657	Right-handed alpha
Helix 128	21D	D	676	684	Right-handed alpha
Helix 129	22D	D	695	704	Right-handed alpha
Helix 130	23D	D	714	725	Right-handed alpha
Helix 131	24D	D	728	735	Right-handed alpha
Helix 132	25D	D	735	747	Right-handed alpha
Helix 133	26D	D	758	768	Right-handed alpha
Helix 134	27D	D	776	792	Right-handed alpha
Helix 135	28D	D	793	806	Right-handed alpha
Helix 136	29D	D	812	825	Right-handed alpha

There are 28 sheets in PDB entry 7GPB. Click on sheet of interest to get list of strands forming it: S1A, S2A, S3A, S4A, S5A, S6A, S7A, S1B, S2B, S3B, S4B, S5B, S6B, S7B, S1C, S2C, S3C, S4C, S5C, S6C, S7C, S1D, S2D, S3D, S4D, S5D, S6D, S7D,

There are 9 strands in S1A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	222	232	anti-parallel
Strand 3	A	237	247	anti-parallel
Strand 4	A	153	160	parallel
Strand 5	A	81	86	parallel
Strand 6	A	332	339	parallel
Strand 7	A	371	376	parallel
Strand 8	A	451	454	parallel
Strand 9	A	478	484	parallel

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There are 2 strands in S2A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	174	178	anti-parallel

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There are 2 strands in S3A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	276	279	parallel

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There are 2 strands in S4A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	209	first strand
Strand 2	A	212	223	anti-parallel

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There are 2 strands in S5A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	92	first strand
Strand 2	A	129	131	anti-parallel

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There are 3 strands in S6A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	389	first strand
Strand 2	A	437	441	anti-parallel
Strand 3	A	430	432	anti-parallel

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There are 6 strands in S7A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	645	first strand
Strand 2	A	600	608	parallel
Strand 3	A	562	570	parallel
Strand 4	A	661	665	parallel
Strand 5	A	687	691	parallel
Strand 6	A	709	711	parallel

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There are 9 strands in S1B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	222	232	anti-parallel
Strand 3	B	237	247	anti-parallel
Strand 4	B	153	160	parallel
Strand 5	B	81	86	parallel
Strand 6	B	332	339	parallel
Strand 7	B	371	376	parallel
Strand 8	B	451	454	parallel
Strand 9	B	478	484	parallel

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There are 2 strands in S2B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	174	178	anti-parallel

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There are 2 strands in S3B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	276	279	parallel

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There are 2 strands in S4B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	209	first strand
Strand 2	B	212	223	anti-parallel

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There are 2 strands in S5B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	92	first strand
Strand 2	B	129	131	anti-parallel

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There are 3 strands in S6B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	389	first strand
Strand 2	B	437	441	anti-parallel
Strand 3	B	430	432	anti-parallel

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There are 6 strands in S7B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	645	first strand
Strand 2	B	600	608	parallel
Strand 3	B	562	570	parallel
Strand 4	B	661	665	parallel
Strand 5	B	687	691	parallel
Strand 6	B	709	711	parallel

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There are 9 strands in S1C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	193	first strand
Strand 2	C	222	232	anti-parallel
Strand 3	C	237	247	anti-parallel
Strand 4	C	153	160	parallel
Strand 5	C	81	86	parallel
Strand 6	C	332	339	parallel
Strand 7	C	371	376	parallel
Strand 8	C	451	454	parallel
Strand 9	C	478	484	parallel

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There are 2 strands in S2C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	171	first strand
Strand 2	C	174	178	anti-parallel

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There are 2 strands in S3C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	276	279	parallel

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There are 2 strands in S4C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	209	first strand
Strand 2	C	212	223	anti-parallel

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There are 2 strands in S5C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	92	first strand
Strand 2	C	129	131	anti-parallel

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There are 3 strands in S6C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	389	first strand
Strand 2	C	437	441	anti-parallel
Strand 3	C	430	432	anti-parallel

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There are 6 strands in S7C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	645	first strand
Strand 2	C	600	608	parallel
Strand 3	C	562	570	parallel
Strand 4	C	661	665	parallel
Strand 5	C	687	691	parallel
Strand 6	C	709	711	parallel

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There are 9 strands in S1D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	193	first strand
Strand 2	D	222	232	anti-parallel
Strand 3	D	237	247	anti-parallel
Strand 4	D	153	160	parallel
Strand 5	D	81	86	parallel
Strand 6	D	332	339	parallel
Strand 7	D	371	376	parallel
Strand 8	D	451	454	parallel
Strand 9	D	478	484	parallel

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There are 2 strands in S2D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	171	first strand
Strand 2	D	174	178	anti-parallel

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There are 2 strands in S3D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	276	279	parallel

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There are 2 strands in S4D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	209	first strand
Strand 2	D	212	223	anti-parallel

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There are 2 strands in S5D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	92	first strand
Strand 2	D	129	131	anti-parallel

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There are 3 strands in S6D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	389	first strand
Strand 2	D	437	441	anti-parallel
Strand 3	D	430	432	anti-parallel

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There are 6 strands in S7D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	639	645	first strand
Strand 2	D	600	608	parallel
Strand 3	D	562	570	parallel
Strand 4	D	661	665	parallel
Strand 5	D	687	691	parallel
Strand 6	D	709	711	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7GPB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7GPB