Analysis of interatomic Contacts of Structural Units in PDB entry:
7JFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JFM entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7JFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 191SER 378
A
 LEU 380SER 388
C
 ALA 2066ARG 2104
B
 GLN 195SER 378
B
 LEU 380SER 390
D
 LEU 2067ALA 2106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7JFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
240 244Right-handed 310
Helix 2
AA2
A
247 260Right-handed alpha
Helix 3
AA3
A
315 327Right-handed alpha
Helix 4
AA4
A
350 354Right-handed 310
Helix 5
AA5
A
363 375Right-handed alpha
Helix 6
AA6
C
2067 2071Right-handed 310
Helix 7
AA7
C
2079 2093Right-handed alpha
Helix 8
AA8
C
2093 2103Right-handed alpha
Helix 9
AA9
B
240 244Right-handed 310
Helix 10
AB1
B
247 261Right-handed alpha
Helix 11
AB2
B
315 328Right-handed alpha
Helix 12
AB3
B
350 354Right-handed 310
Helix 13
AB4
B
363 375Right-handed alpha
Helix 14
AB5
D
2080 2093Right-handed alpha
Helix 15
AB6
D
2093 2106Right-handed alpha
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There are 4 sheets in PDB entry 7JFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 214first strand
Strand 2
A
198 204anti-parallel
Strand 3
A
356 362anti-parallel
Strand 4
A
336 341anti-parallel
Strand 5
A
284 289anti-parallel
Strand 6
A
302 303anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 237first strand
Strand 2
A
220 223parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
273 278anti-parallel
Strand 5
A
311 314anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 214first strand
Strand 2
B
198 204anti-parallel
Strand 3
B
356 362anti-parallel
Strand 4
B
336 341anti-parallel
Strand 5
B
284 289anti-parallel
Strand 6
B
302 303anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
220 223parallel
Strand 3
B
265 269anti-parallel
Strand 4
B
273 278anti-parallel
Strand 5
B
313 314anti-parallel
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