Analysis of interatomic Contacts of Structural Units in PDB entry:
7JFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JFN entry

There is 1 chain in PDB entry 7JFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 81PRO 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7JFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 117Right-handed alpha
Helix 2
AA2
A
134 149Right-handed alpha
Helix 3
AA3
A
159 177Right-handed alpha
Helix 4
AA4
A
191 196Right-handed 310
Helix 5
AA5
A
209 224Right-handed alpha
Helix 6
AA6
A
238 256Right-handed alpha
Helix 7
AA7
A
273 284Right-handed alpha
Helix 8
AA8
A
294 308Right-handed alpha
Helix 9
AA9
A
322 328Right-handed alpha
Helix 10
AB1
A
329 332Right-handed 310
Helix 11
AB2
A
345 361Right-handed alpha
Helix 12
AB3
A
367 384Right-handed alpha
Helix 13
AB4
A
393 404Right-handed alpha
Helix 14
AB5
A
453 458Right-handed alpha
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There are 3 sheets in PDB entry 7JFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 131first strand
Strand 2
A
85 90parallel
Strand 3
A
153 156parallel
Strand 4
A
183 186parallel
Strand 5
A
203 205parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 265first strand
Strand 2
A
230 236parallel
Strand 3
A
287 290parallel
Strand 4
A
312 315parallel
Strand 5
A
335 338parallel
Strand 6
A
426 432anti-parallel
Strand 7
A
445 452anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 408first strand
Strand 2
A
411 415anti-parallel
Strand 3
A
422 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il