Analysis of interatomic Contacts of Structural Units in PDB entry:
7JFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JFS entry

There is 1 chain in PDB entry 7JFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 46ASN 1003
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7JFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 60Right-handed 310
Helix 2
AA2
A
61 70Right-handed alpha
Helix 3
AA3
A
72 74Right-handed 310
Helix 4
AA4
A
90 96Right-handed 310
Helix 5
AA5
A
196 200Right-handed 310
Helix 6
AA6
A
212 220Right-handed alpha
Helix 7
AA7
A
231 235Right-handed 310
Helix 8
AA8
A
236 248Right-handed alpha
Helix 9
AA9
A
252 255Right-handed 310
Helix 10
AB1
A
256 268Right-handed alpha
Helix 11
AB2
A
283 286Right-handed 310
Helix 12
AB3
A
287 295Right-handed alpha
Helix 13
AB4
A
297 299Right-handed 310
Helix 14
AB5
A
315 321Right-handed 310
Helix 15
AB6
A
420 422Right-handed 310
Helix 16
AB7
A
434 440Right-handed alpha
Helix 17
AB8
A
441 443Right-handed 310
Helix 18
AB9
A
458 468Right-handed alpha
Helix 19
AC1
A
474 488Right-handed alpha
Helix 20
AC2
A
505 513Right-handed alpha
Helix 21
AC3
A
601 605Right-handed 310
Helix 22
AC4
A
628 646Right-handed alpha
Helix 23
AC5
A
666 677Right-handed alpha
Helix 24
AC6
A
680 698Right-handed alpha
Helix 25
AC7
A
705 709Right-handed 310
Helix 26
AC8
A
739 741Right-handed 310
Helix 27
AC9
A
742 748Right-handed alpha
Helix 28
AD1
A
751 762Right-handed alpha
Helix 29
AD2
A
772 774Right-handed 310
Helix 30
AD3
A
775 786Right-handed alpha
Helix 31
AD4
A
789 794Right-handed alpha
Helix 32
AD5
A
795 800Right-handed alpha
Helix 33
AD6
A
800 806Right-handed alpha
Helix 34
AD7
A
823 826Right-handed 310
Helix 35
AD8
A
827 837Right-handed alpha
Helix 36
AD9
A
839 851Right-handed alpha
Helix 37
AE1
A
857 874Right-handed alpha
Helix 38
AE2
A
877 885Right-handed alpha
Helix 39
AE3
A
889 897Right-handed alpha
Helix 40
AE4
A
905 909Right-handed 310
Helix 41
AE5
A
910 914Right-handed 310
Helix 42
AE6
A
946 949Right-handed 310
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There are 12 sheets in PDB entry 7JFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
176 195anti-parallel
Strand 3
A
116 133anti-parallel
Strand 4
A
147 153first strand
Strand 5
A
162 168anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 81first strand
Strand 2
A
116 133anti-parallel
Strand 3
A
176 195anti-parallel
Strand 4
A
205 210first strand
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
202 203anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
385 391parallel
Strand 3
A
368 376anti-parallel
Strand 4
A
399 418anti-parallel
Strand 5
A
341 357anti-parallel
Strand 6
A
301 306anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
399 418anti-parallel
Strand 3
A
341 357anti-parallel
Strand 4
A
429 431anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 329first strand
Strand 2
A
424 425anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 565first strand
Strand 2
A
548 553anti-parallel
Strand 3
A
593 598anti-parallel
Strand 4
A
522 528anti-parallel
Strand 5
A
617 618anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 574first strand
Strand 2
A
533 539anti-parallel
Strand 3
A
610 614anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
654 657parallel
Strand 3
A
662 665anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
716 719first strand
Strand 2
A
734 737parallel
Strand 3
A
728 731anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 934first strand
Strand 2
A
937 944anti-parallel
Strand 3
A
971 974anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
962 967first strand
Strand 2
A
952 959anti-parallel
Strand 3
A
985 991anti-parallel
Strand 4
A
1000 1002anti-parallel
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