Analysis of interatomic Contacts of Structural Units in PDB entry:
7JFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JFZ entry

There is 1 chain in PDB entry 7JFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9SER 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7JFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 37Right-handed alpha
Helix 2
AA2
A
44 47Right-handed 310
Helix 3
AA3
A
60 74Right-handed alpha
Helix 4
AA4
A
108 112Right-handed 310
Helix 5
AA5
A
113 123Right-handed alpha
Helix 6
AA6
A
141 160Right-handed alpha
Helix 7
AA7
A
177 179Right-handed 310
Helix 8
AA8
A
180 188Right-handed alpha
Helix 9
AA9
A
198 208Right-handed alpha
Helix 10
AB1
A
217 232Right-handed alpha
Helix 11
AB2
A
242 254Right-handed alpha
Helix 12
AB3
A
279 290Right-handed alpha
Helix 13
AB4
A
290 315Right-handed alpha
Helix 14
AB5
A
325 333Right-handed alpha
Helix 15
AB6
A
337 341Right-handed 310
Helix 16
AB7
A
344 348Right-handed alpha
Helix 17
AB8
A
348 354Right-handed alpha
Helix 18
AB9
A
368 383Right-handed alpha
Helix 19
AC1
A
386 400Right-handed alpha
Helix 20
AC2
A
416 430Right-handed alpha
Helix 21
AC3
A
467 481Right-handed alpha
Helix 22
AC4
A
510 536Right-handed alpha
Helix 23
AC5
A
537 547Right-handed alpha
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There are 5 sheets in PDB entry 7JFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
55 56anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 92first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
100 104parallel
Strand 4
A
484 489parallel
Strand 5
A
499 507anti-parallel
Strand 6
A
437 440anti-parallel
Strand 7
A
358 364anti-parallel
Strand 8
A
407 412anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 92first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
100 104parallel
Strand 4
A
484 489parallel
Strand 5
A
499 507anti-parallel
Strand 6
A
449 450anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
236 240parallel
Strand 3
A
191 196parallel
Strand 4
A
168 172parallel
Strand 5
A
259 260parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
342 343parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il