Analysis of interatomic Contacts of Structural Units in PDB entry:
7JG1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JG1 entry

There are 5 chains in PDB entry 7JG1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 237	TYR 467
B	CYS 237	SER 460
C	CYS 237	TYR 467
D	CYS 237	GLY 464
J	GLU 3	PRO 136

There are 21 helices in PDB entry 7JG1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	247	253	Right-handed alpha
Helix 2	AA2	A	307	312	Right-handed alpha
Helix 3	AA3	A	350	355	Right-handed alpha
Helix 4	AA4	A	386	388	Right-handed 310
Helix 5	AA5	A	416	421	Right-handed alpha
Helix 6	AA6	B	247	252	Right-handed alpha
Helix 7	AA7	B	306	311	Right-handed alpha
Helix 8	AA8	B	350	355	Right-handed alpha
Helix 9	AA9	B	386	388	Right-handed 310
Helix 10	AB1	B	416	422	Right-handed alpha
Helix 11	AB2	C	247	253	Right-handed alpha
Helix 12	AB3	C	306	311	Right-handed alpha
Helix 13	AB4	C	350	355	Right-handed alpha
Helix 14	AB5	C	386	388	Right-handed 310
Helix 15	AB6	C	416	422	Right-handed alpha
Helix 16	AB7	D	248	253	Right-handed alpha
Helix 17	AB8	D	306	313	Right-handed alpha
Helix 18	AB9	D	350	356	Right-handed alpha
Helix 19	AC1	D	386	388	Right-handed 310
Helix 20	AC2	D	415	422	Right-handed alpha
Helix 21	AC3	J	64	68	Right-handed alpha

There are 25 sheets in PDB entry 7JG1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	258	264	anti-parallel
Strand 3	A	297	304	anti-parallel
Strand 4	A	285	286	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	258	264	anti-parallel
Strand 3	A	297	304	anti-parallel
Strand 4	A	290	291	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	276	first strand
Strand 2	A	316	321	anti-parallel
Strand 3	A	327	332	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	347	first strand
Strand 2	A	359	369	anti-parallel
Strand 3	A	406	415	anti-parallel
Strand 4	A	390	392	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	347	first strand
Strand 2	A	359	369	anti-parallel
Strand 3	A	406	415	anti-parallel
Strand 4	A	396	397	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	425	430	anti-parallel
Strand 3	A	438	443	anti-parallel
Strand 4	J	121	128	parallel
Strand 5	J	111	118	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	460	first strand
Strand 2	A	453	460	parallel
Strand 3	J	59	63	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	258	266	anti-parallel
Strand 3	B	297	304	anti-parallel
Strand 4	B	285	286	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	258	266	anti-parallel
Strand 3	B	297	304	anti-parallel
Strand 4	B	290	291	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	316	321	anti-parallel
Strand 3	B	327	332	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	347	first strand
Strand 2	B	359	369	anti-parallel
Strand 3	B	406	415	anti-parallel
Strand 4	B	390	397	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	384	first strand
Strand 2	B	375	380	anti-parallel
Strand 3	B	425	430	anti-parallel
Strand 4	B	439	443	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	244	first strand
Strand 2	C	258	266	anti-parallel
Strand 3	C	297	304	anti-parallel
Strand 4	C	285	286	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	244	first strand
Strand 2	C	258	266	anti-parallel
Strand 3	C	297	304	anti-parallel
Strand 4	C	290	291	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	276	first strand
Strand 2	C	315	321	anti-parallel
Strand 3	C	327	333	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	347	first strand
Strand 2	C	359	367	anti-parallel
Strand 3	C	406	415	anti-parallel
Strand 4	C	390	392	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	347	first strand
Strand 2	C	359	367	anti-parallel
Strand 3	C	406	415	anti-parallel
Strand 4	C	396	397	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	384	first strand
Strand 2	C	375	380	anti-parallel
Strand 3	C	425	430	anti-parallel
Strand 4	C	438	443	anti-parallel
Strand 5	J	81	86	parallel
Strand 6	J	74	78	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	458	first strand
Strand 2	C	454	460	parallel
Strand 3	J	31	42	parallel
Strand 4	J	15	23	anti-parallel
Strand 5	J	5	8	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	465	466	first strand
Strand 2	J	104	105	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	244	first strand
Strand 2	D	258	266	anti-parallel
Strand 3	D	297	304	anti-parallel
Strand 4	D	285	287	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	276	first strand
Strand 2	D	315	322	anti-parallel
Strand 3	D	326	333	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	347	first strand
Strand 2	D	362	368	anti-parallel
Strand 3	D	406	412	anti-parallel
Strand 4	D	390	392	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	347	first strand
Strand 2	D	362	368	anti-parallel
Strand 3	D	406	412	anti-parallel
Strand 4	D	396	397	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	384	first strand
Strand 2	D	375	380	anti-parallel
Strand 3	D	425	430	anti-parallel
Strand 4	D	438	443	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JG1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JG1