Analysis of interatomic Contacts of Structural Units in PDB entry:
7JG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JG8 entry

There are 20 chains in PDB entry 7JG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	LYS 546
B	ALA 8	VAL 520
C	ALA 9	VAL 520
D	THR 8	LEU 471
E	THR 8	LEU 471
F	THR 8	LEU 471
G	THR 4	LEU 303
H	ASP 3	GLN 119
a	THR 31	GLU 246
b	PRO 27	VAL 164
d	MET 1	PRO 444
1	PRO 5	LEU 85
2	PRO 5	LEU 85
3	PRO 5	LEU 85
4	PRO 5	LEU 85
5	PRO 5	LEU 85
6	PRO 5	LEU 85
7	PRO 5	LEU 85
8	PRO 5	LEU 85
9	PRO 5	LEU 85

There are198 helices in PDB entry 7JG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	22	Right-handed alpha
Helix 2	AA2	A	81	85	Right-handed 310
Helix 3	AA3	A	103	107	Right-handed 310
Helix 4	AA4	A	138	142	Right-handed 310
Helix 5	AA5	A	153	158	Right-handed alpha
Helix 6	AA6	A	177	189	Right-handed alpha
Helix 7	AA7	A	189	194	Right-handed alpha
Helix 8	AA8	A	212	226	Right-handed alpha
Helix 9	AA9	A	227	230	Right-handed 310
Helix 10	AB1	A	242	264	Right-handed alpha
Helix 11	AB2	A	273	288	Right-handed alpha
Helix 12	AB3	A	293	297	Right-handed 310
Helix 13	AB4	A	298	299	Right-handed 310
Helix 14	AB5	A	300	310	Right-handed alpha
Helix 15	AB6	A	316	320	Right-handed 310
Helix 16	AB7	A	339	349	Right-handed alpha
Helix 17	AB8	A	356	362	Right-handed alpha
Helix 18	AB9	A	377	381	Right-handed 310
Helix 19	AC1	A	383	391	Right-handed alpha
Helix 20	AC2	A	392	407	Right-handed alpha
Helix 21	AC3	A	408	410	Right-handed 310
Helix 22	AC4	A	414	432	Right-handed alpha
Helix 23	AC5	A	440	453	Right-handed alpha
Helix 24	AC6	A	454	459	Right-handed 310
Helix 25	AC7	A	460	462	Right-handed 310
Helix 26	AC8	A	463	479	Right-handed alpha
Helix 27	AC9	A	479	490	Right-handed alpha
Helix 28	AD1	A	493	511	Right-handed alpha
Helix 29	AD2	B	9	22	Right-handed alpha
Helix 30	AD3	B	81	85	Right-handed 310
Helix 31	AD4	B	103	107	Right-handed 310
Helix 32	AD5	B	153	158	Right-handed alpha
Helix 33	AD6	B	177	189	Right-handed alpha
Helix 34	AD7	B	189	194	Right-handed alpha
Helix 35	AD8	B	212	225	Right-handed alpha
Helix 36	AD9	B	226	230	Right-handed 310
Helix 37	AE1	B	242	263	Right-handed alpha
Helix 38	AE2	B	274	288	Right-handed alpha
Helix 39	AE3	B	293	297	Right-handed 310
Helix 40	AE4	B	298	299	Right-handed 310
Helix 41	AE5	B	300	310	Right-handed alpha
Helix 42	AE6	B	316	320	Right-handed 310
Helix 43	AE7	B	339	349	Right-handed alpha
Helix 44	AE8	B	356	362	Right-handed alpha
Helix 45	AE9	B	377	382	Right-handed 310
Helix 46	AF1	B	383	404	Right-handed alpha
Helix 47	AF2	B	405	410	Right-handed 310
Helix 48	AF3	B	414	431	Right-handed alpha
Helix 49	AF4	B	440	453	Right-handed alpha
Helix 50	AF5	B	454	459	Right-handed 310
Helix 51	AF6	B	460	462	Right-handed 310
Helix 52	AF7	B	463	479	Right-handed alpha
Helix 53	AF8	B	479	490	Right-handed alpha
Helix 54	AF9	B	493	511	Right-handed alpha
Helix 55	AG1	C	10	22	Right-handed alpha
Helix 56	AG2	C	81	85	Right-handed 310
Helix 57	AG3	C	103	107	Right-handed 310
Helix 58	AG4	C	153	160	Right-handed alpha
Helix 59	AG5	C	177	189	Right-handed alpha
Helix 60	AG6	C	189	194	Right-handed alpha
Helix 61	AG7	C	212	226	Right-handed alpha
Helix 62	AG8	C	227	230	Right-handed 310
Helix 63	AG9	C	242	263	Right-handed alpha
Helix 64	AH1	C	273	288	Right-handed alpha
Helix 65	AH2	C	293	297	Right-handed 310
Helix 66	AH3	C	298	299	Right-handed 310
Helix 67	AH4	C	300	310	Right-handed alpha
Helix 68	AH5	C	339	349	Right-handed alpha
Helix 69	AH6	C	356	362	Right-handed alpha
Helix 70	AH7	C	383	391	Right-handed alpha
Helix 71	AH8	C	392	408	Right-handed alpha
Helix 72	AH9	C	414	432	Right-handed alpha
Helix 73	AI1	C	440	453	Right-handed alpha
Helix 74	AI2	C	454	459	Right-handed 310
Helix 75	AI3	C	463	478	Right-handed alpha
Helix 76	AI4	C	480	490	Right-handed alpha
Helix 77	AI5	C	493	511	Right-handed alpha
Helix 78	AI6	D	42	46	Right-handed 310
Helix 79	AI7	D	91	95	Right-handed 310
Helix 80	AI8	D	110	115	Right-handed 310
Helix 81	AI9	D	126	130	Right-handed 310
Helix 82	AJ1	D	141	148	Right-handed alpha
Helix 83	AJ2	D	165	181	Right-handed alpha
Helix 84	AJ3	D	193	207	Right-handed alpha
Helix 85	AJ4	D	208	211	Right-handed 310
Helix 86	AJ5	D	223	244	Right-handed alpha
Helix 87	AJ6	D	256	268	Right-handed alpha
Helix 88	AJ7	D	275	279	Right-handed 310
Helix 89	AJ8	D	282	292	Right-handed alpha
Helix 90	AJ9	D	293	295	Right-handed 310
Helix 91	AK1	D	311	314	Right-handed 310
Helix 92	AK2	D	317	324	Right-handed alpha
Helix 93	AK3	D	325	327	Right-handed 310
Helix 94	AK4	D	334	340	Right-handed alpha
Helix 95	AK5	D	362	389	Right-handed alpha
Helix 96	AK6	D	390	394	Right-handed 310
Helix 97	AK7	D	395	413	Right-handed alpha
Helix 98	AK8	D	416	418	Right-handed 310
Helix 99	AK9	D	419	424	Right-handed alpha
Helix 100	AL1	D	431	444	Right-handed alpha
Helix 101	AL2	D	451	456	Right-handed 310
Helix 102	AL3	D	460	469	Right-handed alpha
Helix 103	AL4	E	42	46	Right-handed 310
Helix 104	AL5	E	126	130	Right-handed 310
Helix 105	AL6	E	141	148	Right-handed alpha
Helix 106	AL7	E	165	180	Right-handed alpha
Helix 107	AL8	E	193	207	Right-handed alpha
Helix 108	AL9	E	209	211	Right-handed 310
Helix 109	AM1	E	223	244	Right-handed alpha
Helix 110	AM2	E	255	270	Right-handed alpha
Helix 111	AM3	E	282	292	Right-handed alpha
Helix 112	AM4	E	310	314	Right-handed 310
Helix 113	AM5	E	317	327	Right-handed alpha
Helix 114	AM6	E	334	339	Right-handed alpha
Helix 115	AM7	E	362	389	Right-handed alpha
Helix 116	AM8	E	390	394	Right-handed 310
Helix 117	AM9	E	395	412	Right-handed alpha
Helix 118	AN1	E	419	424	Right-handed alpha
Helix 119	AN2	E	431	444	Right-handed alpha
Helix 120	AN3	E	451	455	Right-handed 310
Helix 121	AN4	E	460	471	Right-handed alpha
Helix 122	AN5	F	42	46	Right-handed 310
Helix 123	AN6	F	91	95	Right-handed 310
Helix 124	AN7	F	141	148	Right-handed alpha
Helix 125	AN8	F	165	177	Right-handed alpha
Helix 126	AN9	F	193	207	Right-handed alpha
Helix 127	AO1	F	209	211	Right-handed 310
Helix 128	AO2	F	223	244	Right-handed alpha
Helix 129	AO3	F	256	271	Right-handed alpha
Helix 130	AO4	F	275	279	Right-handed 310
Helix 131	AO5	F	282	292	Right-handed alpha
Helix 132	AO6	F	311	314	Right-handed 310
Helix 133	AO7	F	317	324	Right-handed alpha
Helix 134	AO8	F	325	327	Right-handed 310
Helix 135	AO9	F	334	340	Right-handed alpha
Helix 136	AP1	F	357	362	Right-handed alpha
Helix 137	AP2	F	362	390	Right-handed alpha
Helix 138	AP3	F	395	412	Right-handed alpha
Helix 139	AP4	F	419	424	Right-handed alpha
Helix 140	AP5	F	431	445	Right-handed alpha
Helix 141	AP6	F	451	455	Right-handed 310
Helix 142	AP7	F	460	471	Right-handed alpha
Helix 143	AP8	G	5	61	Right-handed alpha
Helix 144	AP9	G	65	69	Right-handed 310
Helix 145	AQ1	G	91	111	Right-handed alpha
Helix 146	AQ2	G	120	130	Right-handed alpha
Helix 147	AQ3	G	146	163	Right-handed alpha
Helix 148	AQ4	G	227	302	Right-handed alpha
Helix 149	AQ5	H	91	100	Right-handed alpha
Helix 150	AQ6	H	103	117	Right-handed alpha
Helix 151	AQ7	a	32	53	Right-handed alpha
Helix 152	AQ8	a	60	81	Right-handed alpha
Helix 153	AQ9	a	88	109	Right-handed alpha
Helix 154	AR1	a	126	129	Right-handed 310
Helix 155	AR2	a	130	154	Right-handed alpha
Helix 156	AR3	a	157	165	Right-handed alpha
Helix 157	AR4	a	167	169	Right-handed 310
Helix 158	AR5	a	170	204	Right-handed alpha
Helix 159	AR6	a	207	246	Right-handed alpha
Helix 160	AR7	b	29	49	Right-handed alpha
Helix 161	AR8	b	49	161	Right-handed alpha
Helix 162	AR9	d	2	22	Right-handed alpha
Helix 163	AS1	d	22	137	Right-handed alpha
Helix 164	AS2	d	139	157	Right-handed alpha
Helix 165	AS3	d	173	193	Right-handed alpha
Helix 166	AS4	d	195	216	Right-handed alpha
Helix 167	AS5	d	216	224	Right-handed alpha
Helix 168	AS6	d	230	242	Right-handed alpha
Helix 169	AS7	d	246	259	Right-handed alpha
Helix 170	AS8	d	263	287	Right-handed alpha
Helix 171	AS9	d	288	306	Right-handed alpha
Helix 172	AT1	d	306	314	Right-handed alpha
Helix 173	AT2	d	319	331	Right-handed alpha
Helix 174	AT3	d	338	351	Right-handed alpha
Helix 175	AT4	d	356	372	Right-handed alpha
Helix 176	AT5	d	386	402	Right-handed alpha
Helix 177	AT6	d	412	416	Right-handed 310
Helix 178	AT7	d	432	442	Right-handed alpha
Helix 179	AT8	1	6	46	Right-handed alpha
Helix 180	AT9	1	48	82	Right-handed alpha
Helix 181	AU1	2	6	45	Right-handed alpha
Helix 182	AU2	2	46	48	Right-handed 310
Helix 183	AU3	2	49	81	Right-handed alpha
Helix 184	AU4	3	6	46	Right-handed alpha
Helix 185	AU5	3	49	80	Right-handed alpha
Helix 186	AU6	4	6	45	Right-handed alpha
Helix 187	AU7	4	46	48	Right-handed 310
Helix 188	AU8	4	49	82	Right-handed alpha
Helix 189	AU9	5	6	44	Right-handed alpha
Helix 190	AV1	5	48	80	Right-handed alpha
Helix 191	AV2	6	6	46	Right-handed alpha
Helix 192	AV3	6	49	82	Right-handed alpha
Helix 193	AV4	7	6	46	Right-handed alpha
Helix 194	AV5	7	49	82	Right-handed alpha
Helix 195	AV6	8	6	46	Right-handed alpha
Helix 196	AV7	8	49	81	Right-handed alpha
Helix 197	AV8	9	6	46	Right-handed alpha
Helix 198	AV9	9	49	81	Right-handed alpha

There are 26 sheets in PDB entry 7JG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	405	409	first strand
Strand 2	d	375	380	parallel
Strand 3	d	418	423	anti-parallel
Strand 4	d	426	431	anti-parallel
Strand 5	A	29	38	anti-parallel
Strand 6	A	90	97	anti-parallel
Strand 7	A	54	57	anti-parallel
Strand 8	A	63	69	anti-parallel
Strand 9	A	73	79	anti-parallel
Strand 10	A	41	45	anti-parallel

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There are 24 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	79	first strand
Strand 2	A	63	69	anti-parallel
Strand 3	D	10	16	anti-parallel
Strand 4	D	19	23	anti-parallel
Strand 5	D	61	66	anti-parallel
Strand 6	D	47	58	anti-parallel
Strand 7	B	31	38	anti-parallel
Strand 8	B	41	46	anti-parallel
Strand 9	B	73	77	anti-parallel
Strand 10	B	68	69	anti-parallel
Strand 11	E	10	16	anti-parallel
Strand 12	E	19	23	anti-parallel
Strand 13	E	61	66	anti-parallel
Strand 14	E	47	58	anti-parallel
Strand 15	C	31	38	anti-parallel
Strand 16	C	41	45	anti-parallel
Strand 17	C	73	79	anti-parallel
Strand 18	C	63	69	anti-parallel
Strand 19	F	10	16	anti-parallel
Strand 20	F	19	23	anti-parallel
Strand 21	F	61	66	anti-parallel
Strand 22	F	47	58	anti-parallel
Strand 23	A	29	38	anti-parallel
Strand 24	A	41	45	anti-parallel

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There are 24 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	97	first strand
Strand 2	A	54	57	anti-parallel
Strand 3	A	63	69	anti-parallel
Strand 4	D	10	16	anti-parallel
Strand 5	D	78	85	anti-parallel
Strand 6	D	34	40	anti-parallel
Strand 7	D	47	58	anti-parallel
Strand 8	B	31	38	anti-parallel
Strand 9	B	41	46	anti-parallel
Strand 10	B	73	77	anti-parallel
Strand 11	B	68	69	anti-parallel
Strand 12	E	10	16	anti-parallel
Strand 13	E	78	85	anti-parallel
Strand 14	E	34	40	anti-parallel
Strand 15	E	47	58	anti-parallel
Strand 16	C	31	38	anti-parallel
Strand 17	C	90	97	anti-parallel
Strand 18	C	54	57	anti-parallel
Strand 19	C	63	69	anti-parallel
Strand 20	F	10	16	anti-parallel
Strand 21	F	78	85	anti-parallel
Strand 22	F	34	40	anti-parallel
Strand 23	F	47	58	anti-parallel
Strand 24	A	29	38	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	54	58	anti-parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	31	38	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	128	131	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	232	237	parallel
Strand 3	A	202	209	parallel
Strand 4	A	266	272	parallel
Strand 5	A	323	331	parallel
Strand 6	A	170	172	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	374	375	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	G	195	210	parallel
Strand 3	G	182	192	anti-parallel
Strand 4	G	76	82	parallel
Strand 5	G	113	119	parallel
Strand 6	G	134	138	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	128	131	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	232	237	parallel
Strand 3	B	202	209	parallel
Strand 4	B	266	272	parallel
Strand 5	B	323	328	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	351	352	parallel
Strand 3	B	374	375	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	128	131	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	232	237	parallel
Strand 3	C	202	209	parallel
Strand 4	C	266	272	parallel
Strand 5	C	323	331	parallel
Strand 6	C	170	172	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	352	first strand
Strand 2	C	374	375	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	116	119	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	213	218	parallel
Strand 3	D	184	190	parallel
Strand 4	D	249	254	parallel
Strand 5	D	302	309	parallel
Strand 6	D	155	160	parallel
Strand 7	D	329	332	parallel
Strand 8	D	352	353	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	137	first strand
Strand 2	D	150	151	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	90	first strand
Strand 2	E	116	119	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	213	218	parallel
Strand 3	E	184	190	parallel
Strand 4	E	249	254	parallel
Strand 5	E	302	307	parallel
Strand 6	E	155	159	parallel
Strand 7	E	329	332	parallel
Strand 8	E	352	353	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	137	first strand
Strand 2	E	150	151	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	89	first strand
Strand 2	F	117	119	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	F	213	218	parallel
Strand 3	F	184	190	parallel
Strand 4	F	249	254	parallel
Strand 5	F	302	309	parallel
Strand 6	F	155	160	parallel
Strand 7	F	329	332	parallel
Strand 8	F	352	353	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	137	first strand
Strand 2	F	150	151	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	223	225	first strand
Strand 2	H	41	44	parallel
Strand 3	H	69	73	anti-parallel
Strand 4	H	76	81	anti-parallel
Strand 5	H	4	10	parallel
Strand 6	H	16	20	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	34	first strand
Strand 2	H	22	27	anti-parallel
Strand 3	H	50	54	anti-parallel
Strand 4	H	61	66	anti-parallel
Strand 5	H	83	86	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JG8