Analysis of interatomic Contacts of Structural Units in PDB entry:
7JGJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JGJ entry

There are 3 chains in PDB entry 7JGJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 674	ILE 1958
L	GLU 1	GLU 212
H	GLU 1	PRO 218

There are 44 helices in PDB entry 7JGJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	782	793	Right-handed alpha
Helix 2	AA2	A	807	809	Right-handed 310
Helix 3	AA3	A	1075	1082	Right-handed alpha
Helix 4	AA4	A	1119	1130	Right-handed alpha
Helix 5	AA5	A	1134	1144	Right-handed alpha
Helix 6	AA6	A	1169	1174	Right-handed alpha
Helix 7	AA7	A	1224	1238	Right-handed alpha
Helix 8	AA8	A	1243	1250	Right-handed alpha
Helix 9	AA9	A	1257	1262	Right-handed 310
Helix 10	AB1	A	1263	1273	Right-handed alpha
Helix 11	AB2	A	1273	1283	Right-handed alpha
Helix 12	AB3	A	1292	1306	Right-handed alpha
Helix 13	AB4	A	1306	1321	Right-handed alpha
Helix 14	AB5	A	1330	1336	Right-handed alpha
Helix 15	AB6	A	1337	1342	Right-handed 310
Helix 16	AB7	A	1347	1358	Right-handed alpha
Helix 17	AB8	A	1359	1364	Right-handed alpha
Helix 18	AB9	A	1367	1375	Right-handed alpha
Helix 19	AC1	A	1384	1395	Right-handed alpha
Helix 20	AC2	A	1401	1410	Right-handed alpha
Helix 21	AC3	A	1421	1430	Right-handed alpha
Helix 22	AC4	A	1438	1445	Right-handed alpha
Helix 23	AC5	A	1448	1452	Right-handed 310
Helix 24	AC6	A	1453	1459	Right-handed alpha
Helix 25	AC7	A	1480	1483	Right-handed 310
Helix 26	AC8	A	1491	1519	Right-handed alpha
Helix 27	AC9	A	1522	1527	Right-handed 310
Helix 28	AD1	A	1558	1564	Right-handed alpha
Helix 29	AD2	A	1597	1610	Right-handed alpha
Helix 30	AD3	A	1658	1662	Right-handed 310
Helix 31	AD4	A	1676	1705	Right-handed alpha
Helix 32	AD5	A	1707	1714	Right-handed alpha
Helix 33	AD6	A	1742	1749	Right-handed alpha
Helix 34	AD7	A	1751	1759	Right-handed alpha
Helix 35	AD8	A	1798	1810	Right-handed alpha
Helix 36	AD9	A	1817	1823	Right-handed alpha
Helix 37	AE1	A	1826	1834	Right-handed alpha
Helix 38	AE2	A	1848	1857	Right-handed alpha
Helix 39	AE3	A	1863	1882	Right-handed alpha
Helix 40	AE4	A	1904	1921	Right-handed alpha
Helix 41	AE5	A	1934	1951	Right-handed alpha
Helix 42	AE6	L	120	127	Right-handed alpha
Helix 43	AE7	L	182	188	Right-handed alpha
Helix 44	AE8	H	135	139	Right-handed 310

There are 28 sheets in PDB entry 7JGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	700	first strand
Strand 2	A	687	692	anti-parallel
Strand 3	A	714	719	anti-parallel
Strand 4	A	726	733	anti-parallel
Strand 5	A	742	748	anti-parallel
Strand 6	A	766	769	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	742	748	anti-parallel
Strand 3	A	726	733	anti-parallel
Strand 4	A	1287	1288	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	757	first strand
Strand 2	A	760	761	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	797	799	first strand
Strand 2	A	827	829	parallel
Strand 3	A	853	855	parallel
Strand 4	A	882	884	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	804	805	first strand
Strand 2	A	836	839	parallel
Strand 3	A	857	859	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	862	864	first strand
Strand 2	A	889	892	parallel
Strand 3	A	914	918	parallel
Strand 4	A	949	956	parallel
Strand 5	A	986	989	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	869	871	first strand
Strand 2	A	897	899	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	905	first strand
Strand 2	A	937	938	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	946	first strand
Strand 2	A	977	979	parallel
Strand 3	A	1016	1018	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	964	965	first strand
Strand 2	A	995	996	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1054	1055	first strand
Strand 2	A	1063	1064	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1159	1161	first strand
Strand 2	A	1180	1182	anti-parallel
Strand 3	A	1192	1194	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1207	1209	first strand
Strand 2	A	1214	1216	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1324	1325	first strand
Strand 2	A	1328	1329	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1465	1467	first strand
Strand 2	A	1474	1478	anti-parallel
Strand 3	A	1532	1534	parallel
Strand 4	A	1585	1587	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1736	1739	first strand
Strand 2	A	1715	1720	anti-parallel
Strand 3	A	1760	1762	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1836	1839	first strand
Strand 2	A	1842	1845	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	69	74	anti-parallel
Strand 4	L	61	66	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	84	85	anti-parallel
Strand 4	L	36	37	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	47	48	first strand
Strand 2	L	52	53	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	128	134	first strand
Strand 2	L	174	181	anti-parallel
Strand 3	L	158	162	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	154	first strand
Strand 2	L	146	149	anti-parallel
Strand 3	L	190	194	anti-parallel
Strand 4	L	205	209	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	58	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	23	first strand
Strand 2	H	78	86	anti-parallel
Strand 3	H	68	73	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	130	first strand
Strand 2	H	145	146	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	143	first strand
Strand 2	H	188	190	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	171	177	first strand
Strand 2	H	180	185	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	203	205	first strand
Strand 2	H	210	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JGJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JGJ