Analysis of interatomic Contacts of Structural Units in PDB entry:
7JH3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JH3 entry

There are 7 chains in PDB entry 7JH3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 266
A	SER 268	ASP 421
B	SER 2	ALA 266
B	SER 268	ASP 421
C	SER 2	ALA 266
C	SER 268	ASP 421
D	SER 2	PHE 72

There are 96 helices in PDB entry 7JH3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	14	Right-handed alpha
Helix 2	AA2	A	46	51	Right-handed alpha
Helix 3	AA3	A	58	70	Right-handed alpha
Helix 4	AA4	A	82	96	Right-handed alpha
Helix 5	AA5	A	109	126	Right-handed alpha
Helix 6	AA6	A	141	148	Right-handed alpha
Helix 7	AA7	A	178	193	Right-handed alpha
Helix 8	AA8	A	195	197	Right-handed 310
Helix 9	AA9	A	217	232	Right-handed alpha
Helix 10	AB1	A	251	256	Right-handed 310
Helix 11	AB2	A	266	270	Right-handed 310
Helix 12	AB3	A	282	286	Right-handed alpha
Helix 13	AB4	A	300	317	Right-handed alpha
Helix 14	AB5	A	318	338	Right-handed alpha
Helix 15	AB6	A	367	381	Right-handed alpha
Helix 16	AB7	A	404	421	Right-handed alpha
Helix 17	AB8	B	3	14	Right-handed alpha
Helix 18	AB9	B	46	51	Right-handed alpha
Helix 19	AC1	B	58	70	Right-handed alpha
Helix 20	AC2	B	82	96	Right-handed alpha
Helix 21	AC3	B	109	126	Right-handed alpha
Helix 22	AC4	B	141	148	Right-handed alpha
Helix 23	AC5	B	178	193	Right-handed alpha
Helix 24	AC6	B	195	197	Right-handed 310
Helix 25	AC7	B	217	232	Right-handed alpha
Helix 26	AC8	B	251	256	Right-handed 310
Helix 27	AC9	B	266	270	Right-handed 310
Helix 28	AD1	B	282	286	Right-handed alpha
Helix 29	AD2	B	300	318	Right-handed alpha
Helix 30	AD3	B	318	338	Right-handed alpha
Helix 31	AD4	B	367	381	Right-handed alpha
Helix 32	AD5	B	404	420	Right-handed alpha
Helix 33	AD6	C	3	14	Right-handed alpha
Helix 34	AD7	C	46	51	Right-handed alpha
Helix 35	AD8	C	58	70	Right-handed alpha
Helix 36	AD9	C	82	96	Right-handed alpha
Helix 37	AE1	C	109	126	Right-handed alpha
Helix 38	AE2	C	141	148	Right-handed alpha
Helix 39	AE3	C	178	193	Right-handed alpha
Helix 40	AE4	C	195	197	Right-handed 310
Helix 41	AE5	C	217	232	Right-handed alpha
Helix 42	AE6	C	251	256	Right-handed 310
Helix 43	AE7	C	266	270	Right-handed 310
Helix 44	AE8	C	282	286	Right-handed alpha
Helix 45	AE9	C	300	317	Right-handed alpha
Helix 46	AF1	C	318	338	Right-handed alpha
Helix 47	AF2	C	367	381	Right-handed alpha
Helix 48	AF3	C	404	420	Right-handed alpha
Helix 49	AF4	D	4	14	Right-handed alpha
Helix 50	AF5	D	46	51	Right-handed alpha
Helix 51	AF6	D	58	70	Right-handed alpha
Helix 52	AF7	D	82	96	Right-handed alpha
Helix 53	AF8	D	109	126	Right-handed alpha
Helix 54	AF9	D	141	148	Right-handed alpha
Helix 55	AG1	D	178	193	Right-handed alpha
Helix 56	AG2	D	195	197	Right-handed 310
Helix 57	AG3	D	217	232	Right-handed alpha
Helix 58	AG4	D	251	256	Right-handed 310
Helix 59	AG5	D	266	270	Right-handed 310
Helix 60	AG6	D	282	286	Right-handed alpha
Helix 61	AG7	D	300	317	Right-handed alpha
Helix 62	AG8	D	318	338	Right-handed alpha
Helix 63	AG9	D	367	381	Right-handed alpha
Helix 64	AH1	D	404	420	Right-handed alpha
Helix 65	AH2	E	3	14	Right-handed alpha
Helix 66	AH3	E	46	51	Right-handed alpha
Helix 67	AH4	E	58	70	Right-handed alpha
Helix 68	AH5	E	82	96	Right-handed alpha
Helix 69	AH6	E	109	126	Right-handed alpha
Helix 70	AH7	E	141	148	Right-handed alpha
Helix 71	AH8	E	178	193	Right-handed alpha
Helix 72	AH9	E	195	197	Right-handed 310
Helix 73	AI1	E	217	232	Right-handed alpha
Helix 74	AI2	E	251	256	Right-handed 310
Helix 75	AI3	E	266	270	Right-handed 310
Helix 76	AI4	E	282	286	Right-handed alpha
Helix 77	AI5	E	300	317	Right-handed alpha
Helix 78	AI6	E	318	339	Right-handed alpha
Helix 79	AI7	E	367	381	Right-handed alpha
Helix 80	AI8	E	404	420	Right-handed alpha
Helix 81	AI9	F	3	14	Right-handed alpha
Helix 82	AJ1	F	46	51	Right-handed alpha
Helix 83	AJ2	F	58	70	Right-handed alpha
Helix 84	AJ3	F	82	96	Right-handed alpha
Helix 85	AJ4	F	109	126	Right-handed alpha
Helix 86	AJ5	F	141	148	Right-handed alpha
Helix 87	AJ6	F	178	193	Right-handed alpha
Helix 88	AJ7	F	195	197	Right-handed 310
Helix 89	AJ8	F	217	232	Right-handed alpha
Helix 90	AJ9	F	251	256	Right-handed 310
Helix 91	AK1	F	266	270	Right-handed 310
Helix 92	AK2	F	282	286	Right-handed alpha
Helix 93	AK3	F	300	317	Right-handed alpha
Helix 94	AK4	F	318	338	Right-handed alpha
Helix 95	AK5	F	367	381	Right-handed alpha
Helix 96	AK6	F	404	420	Right-handed alpha

There are 18 sheets in PDB entry 7JH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	30	first strand
Strand 2	A	33	36	anti-parallel
Strand 3	A	41	44	anti-parallel
Strand 4	A	383	384	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	107	first strand
Strand 2	A	276	281	anti-parallel
Strand 3	A	262	265	anti-parallel
Strand 4	A	234	238	parallel
Strand 5	A	199	204	parallel
Strand 6	A	129	133	parallel
Strand 7	A	165	168	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	350	first strand
Strand 2	A	353	358	anti-parallel
Strand 3	A	394	397	anti-parallel
Strand 4	A	386	388	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	30	first strand
Strand 2	B	33	36	anti-parallel
Strand 3	B	41	44	anti-parallel
Strand 4	B	383	384	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	107	first strand
Strand 2	B	276	281	anti-parallel
Strand 3	B	262	265	anti-parallel
Strand 4	B	234	238	parallel
Strand 5	B	199	204	parallel
Strand 6	B	129	133	parallel
Strand 7	B	165	168	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	350	first strand
Strand 2	B	353	358	anti-parallel
Strand 3	B	394	397	anti-parallel
Strand 4	B	386	388	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	30	first strand
Strand 2	C	33	36	anti-parallel
Strand 3	C	41	44	anti-parallel
Strand 4	C	383	384	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	107	first strand
Strand 2	C	276	281	anti-parallel
Strand 3	C	262	265	anti-parallel
Strand 4	C	234	238	parallel
Strand 5	C	199	204	parallel
Strand 6	C	129	133	parallel
Strand 7	C	165	168	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	350	first strand
Strand 2	C	353	358	anti-parallel
Strand 3	C	394	397	anti-parallel
Strand 4	C	386	388	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	30	first strand
Strand 2	D	33	36	anti-parallel
Strand 3	D	41	44	anti-parallel
Strand 4	D	383	384	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	107	first strand
Strand 2	D	276	281	anti-parallel
Strand 3	D	262	265	anti-parallel
Strand 4	D	234	238	parallel
Strand 5	D	199	204	parallel
Strand 6	D	129	133	parallel
Strand 7	D	165	168	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	350	first strand
Strand 2	D	353	358	anti-parallel
Strand 3	D	394	397	anti-parallel
Strand 4	D	386	388	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	30	first strand
Strand 2	E	33	36	anti-parallel
Strand 3	E	41	44	anti-parallel
Strand 4	E	383	384	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	107	first strand
Strand 2	E	276	281	anti-parallel
Strand 3	E	262	265	anti-parallel
Strand 4	E	234	238	parallel
Strand 5	E	199	204	parallel
Strand 6	E	129	133	parallel
Strand 7	E	165	168	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	344	350	first strand
Strand 2	E	353	358	anti-parallel
Strand 3	E	394	397	anti-parallel
Strand 4	E	386	388	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	30	first strand
Strand 2	F	33	36	anti-parallel
Strand 3	F	41	44	anti-parallel
Strand 4	F	383	384	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	107	first strand
Strand 2	F	276	281	anti-parallel
Strand 3	F	262	265	anti-parallel
Strand 4	F	234	238	parallel
Strand 5	F	199	204	parallel
Strand 6	F	129	133	parallel
Strand 7	F	165	168	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	344	350	first strand
Strand 2	F	353	358	anti-parallel
Strand 3	F	394	397	anti-parallel
Strand 4	F	386	388	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JH3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JH3