Analysis of interatomic Contacts of Structural Units in PDB entry:
7JH4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JH4 entry

There are 5 chains in PDB entry 7JH4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 223
B	MET 1	GLU 223
C	MET 1	GLU 223
D	MET 1	GLU 223
E	MET 1	GLU 223

There are 64 helices in PDB entry 7JH4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	28	41	Right-handed alpha
Helix 3	AA3	A	44	48	Right-handed 310
Helix 4	AA4	A	58	68	Right-handed alpha
Helix 5	AA5	A	69	71	Right-handed 310
Helix 6	AA6	A	72	79	Right-handed alpha
Helix 7	AA7	A	95	105	Right-handed alpha
Helix 8	AA8	A	109	111	Right-handed 310
Helix 9	AA9	A	112	127	Right-handed alpha
Helix 10	AB1	A	128	131	Right-handed 310
Helix 11	AB2	A	132	158	Right-handed alpha
Helix 12	AB3	A	169	180	Right-handed alpha
Helix 13	AB4	A	211	215	Right-handed alpha
Helix 14	AB5	B	3	15	Right-handed alpha
Helix 15	AB6	B	28	41	Right-handed alpha
Helix 16	AB7	B	44	48	Right-handed 310
Helix 17	AB8	B	58	67	Right-handed alpha
Helix 18	AB9	B	68	71	Right-handed 310
Helix 19	AC1	B	72	79	Right-handed alpha
Helix 20	AC2	B	95	104	Right-handed alpha
Helix 21	AC3	B	109	111	Right-handed 310
Helix 22	AC4	B	112	127	Right-handed alpha
Helix 23	AC5	B	128	131	Right-handed 310
Helix 24	AC6	B	132	158	Right-handed alpha
Helix 25	AC7	B	169	180	Right-handed alpha
Helix 26	AC8	B	211	215	Right-handed alpha
Helix 27	AC9	C	2	15	Right-handed alpha
Helix 28	AD1	C	28	41	Right-handed alpha
Helix 29	AD2	C	44	48	Right-handed 310
Helix 30	AD3	C	58	67	Right-handed alpha
Helix 31	AD4	C	68	71	Right-handed 310
Helix 32	AD5	C	72	79	Right-handed alpha
Helix 33	AD6	C	95	104	Right-handed alpha
Helix 34	AD7	C	109	111	Right-handed 310
Helix 35	AD8	C	112	127	Right-handed alpha
Helix 36	AD9	C	128	131	Right-handed 310
Helix 37	AE1	C	132	158	Right-handed alpha
Helix 38	AE2	C	169	180	Right-handed alpha
Helix 39	AE3	C	211	216	Right-handed alpha
Helix 40	AE4	D	3	15	Right-handed alpha
Helix 41	AE5	D	28	41	Right-handed alpha
Helix 42	AE6	D	44	48	Right-handed 310
Helix 43	AE7	D	58	67	Right-handed alpha
Helix 44	AE8	D	68	71	Right-handed 310
Helix 45	AE9	D	72	79	Right-handed alpha
Helix 46	AF1	D	95	105	Right-handed alpha
Helix 47	AF2	D	109	111	Right-handed 310
Helix 48	AF3	D	112	127	Right-handed alpha
Helix 49	AF4	D	128	131	Right-handed 310
Helix 50	AF5	D	132	158	Right-handed alpha
Helix 51	AF6	D	169	180	Right-handed alpha
Helix 52	AF7	D	211	215	Right-handed alpha
Helix 53	AF8	E	2	15	Right-handed alpha
Helix 54	AF9	E	28	41	Right-handed alpha
Helix 55	AG1	E	44	48	Right-handed 310
Helix 56	AG2	E	58	67	Right-handed alpha
Helix 57	AG3	E	72	79	Right-handed alpha
Helix 58	AG4	E	95	105	Right-handed alpha
Helix 59	AG5	E	109	111	Right-handed 310
Helix 60	AG6	E	112	127	Right-handed alpha
Helix 61	AG7	E	128	131	Right-handed 310
Helix 62	AG8	E	132	158	Right-handed alpha
Helix 63	AG9	E	169	180	Right-handed alpha
Helix 64	AH1	E	211	215	Right-handed alpha

There are 5 sheets in PDB entry 7JH4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	188	197	anti-parallel
Strand 3	A	81	88	anti-parallel
Strand 4	A	51	56	anti-parallel
Strand 5	B	216	219	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	B	51	56	parallel
Strand 3	B	81	88	anti-parallel
Strand 4	B	188	197	anti-parallel
Strand 5	B	161	165	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	C	81	88	anti-parallel
Strand 3	C	188	197	anti-parallel
Strand 4	C	161	165	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	165	first strand
Strand 2	D	188	197	anti-parallel
Strand 3	D	81	88	anti-parallel
Strand 4	D	51	56	anti-parallel
Strand 5	E	216	219	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	219	first strand
Strand 2	E	51	56	parallel
Strand 3	E	81	88	anti-parallel
Strand 4	E	188	197	anti-parallel
Strand 5	E	161	165	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JH4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JH4