Analysis of interatomic Contacts of Structural Units in PDB entry:
7JHG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JHG entry

There are 7 chains in PDB entry 7JHG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 13	GLN 550
B	ASP 180	ILE 272
G	ASN 25	LEU 324
M	GLY 5	PHE 371
L	GLN 4	GLU 214
H	GLU 4	SER 231
N	GLN 10	SER 129

There are 47 helices in PDB entry 7JHG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	71	Right-handed alpha
Helix 2	AA2	A	102	111	Right-handed alpha
Helix 3	AA3	A	114	135	Right-handed alpha
Helix 4	AA4	A	163	170	Right-handed alpha
Helix 5	AA5	A	170	178	Right-handed alpha
Helix 6	AA6	A	183	189	Right-handed alpha
Helix 7	AA7	A	194	212	Right-handed alpha
Helix 8	AA8	A	220	230	Right-handed alpha
Helix 9	AA9	A	240	251	Right-handed alpha
Helix 10	AB1	A	260	266	Right-handed alpha
Helix 11	AB2	A	407	422	Right-handed alpha
Helix 12	AB3	A	533	549	Right-handed alpha
Helix 13	AB4	B	211	216	Right-handed alpha
Helix 14	AB5	G	26	36	Right-handed alpha
Helix 15	AB6	G	37	42	Right-handed 310
Helix 16	AB7	G	56	68	Right-handed alpha
Helix 17	AB8	G	88	98	Right-handed alpha
Helix 18	AB9	G	106	112	Right-handed alpha
Helix 19	AC1	G	113	122	Right-handed alpha
Helix 20	AC2	G	137	148	Right-handed alpha
Helix 21	AC3	G	168	178	Right-handed alpha
Helix 22	AC4	G	192	197	Right-handed alpha
Helix 23	AC5	G	212	223	Right-handed alpha
Helix 24	AC6	G	246	252	Right-handed alpha
Helix 25	AC7	G	261	267	Right-handed alpha
Helix 26	AC8	G	284	295	Right-handed alpha
Helix 27	AC9	G	315	324	Right-handed alpha
Helix 28	AD1	M	16	32	Right-handed alpha
Helix 29	AD2	M	42	52	Right-handed alpha
Helix 30	AD3	M	66	73	Right-handed alpha
Helix 31	AD4	M	82	88	Right-handed alpha
Helix 32	AD5	M	90	96	Right-handed alpha
Helix 33	AD6	M	131	140	Right-handed alpha
Helix 34	AD7	M	153	163	Right-handed alpha
Helix 35	AD8	M	185	201	Right-handed alpha
Helix 36	AD9	M	209	219	Right-handed alpha
Helix 37	AE1	M	228	230	Right-handed 310
Helix 38	AE2	M	231	238	Right-handed alpha
Helix 39	AE3	M	272	284	Right-handed alpha
Helix 40	AE4	M	286	297	Right-handed alpha
Helix 41	AE5	M	304	312	Right-handed alpha
Helix 42	AE6	M	314	326	Right-handed alpha
Helix 43	AE7	M	334	352	Right-handed alpha
Helix 44	AE8	M	356	367	Right-handed alpha
Helix 45	AE9	L	123	128	Right-handed alpha
Helix 46	AF1	L	185	190	Right-handed 310
Helix 47	AF2	H	201	205	Right-handed 310

There are 27 sheets in PDB entry 7JHG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	31	37	anti-parallel
Strand 4	A	43	48	anti-parallel
Strand 5	A	91	96	anti-parallel
Strand 6	A	81	86	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	156	157	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	404	first strand
Strand 2	A	461	467	anti-parallel
Strand 3	A	446	455	anti-parallel
Strand 4	A	433	439	anti-parallel
Strand 5	A	425	428	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	250	255	anti-parallel
Strand 3	B	263	271	anti-parallel
Strand 4	G	45	52	parallel
Strand 5	G	71	76	parallel
Strand 6	G	81	87	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	156	first strand
Strand 2	G	163	166	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	207	208	first strand
Strand 2	G	230	231	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	227	228	first strand
Strand 2	G	241	242	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	278	280	first strand
Strand 2	G	299	303	parallel
Strand 3	G	311	314	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	38	first strand
Strand 2	M	7	10	parallel
Strand 3	M	59	63	parallel
Strand 4	M	258	266	anti-parallel
Strand 5	M	106	111	anti-parallel
Strand 6	M	301	302	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	38	first strand
Strand 2	M	7	10	parallel
Strand 3	M	59	63	parallel
Strand 4	M	258	266	anti-parallel
Strand 5	M	328	329	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	98	99	first strand
Strand 2	M	102	103	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	145	147	first strand
Strand 2	M	222	227	parallel
Strand 3	M	114	118	anti-parallel
Strand 4	M	242	245	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	170	171	first strand
Strand 2	M	176	177	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	45	49	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	25	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	64	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	25	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	67	68	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	162	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	207	211	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	123	127	parallel
Strand 3	H	96	97	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	37	42	anti-parallel
Strand 4	H	99	100	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	140	first strand
Strand 2	H	152	161	anti-parallel
Strand 3	H	192	200	anti-parallel
Strand 4	H	179	181	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	140	first strand
Strand 2	H	152	161	anti-parallel
Strand 3	H	192	200	anti-parallel
Strand 4	H	185	186	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	169	first strand
Strand 2	H	210	216	anti-parallel
Strand 3	H	221	227	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	14	16	first strand
Strand 2	N	26	32	anti-parallel
Strand 3	N	87	93	anti-parallel
Strand 4	N	77	81	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	67	69	first strand
Strand 2	N	54	60	anti-parallel
Strand 3	N	43	48	anti-parallel
Strand 4	N	101	107	anti-parallel
Strand 5	N	120	126	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JHG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JHG