Analysis of interatomic Contacts of Structural Units in PDB entry:
7JHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JHO entry

There are 2 chains in PDB entry 7JHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 55CYS 397
B
 PRO 55CYS 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7JHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 71Right-handed alpha
Helix 2
AA2
A
72 75Right-handed 310
Helix 3
AA3
A
101 106Right-handed alpha
Helix 4
AA4
A
108 112Right-handed 310
Helix 5
AA5
A
113 122Right-handed alpha
Helix 6
AA6
A
154 164Right-handed alpha
Helix 7
AA7
A
170 174Right-handed 310
Helix 8
AA8
A
186 190Right-handed 310
Helix 9
AA9
A
194 206Right-handed alpha
Helix 10
AB1
A
216 218Right-handed 310
Helix 11
AB2
A
219 235Right-handed alpha
Helix 12
AB3
A
251 261Right-handed alpha
Helix 13
AB4
A
263 269Right-handed alpha
Helix 14
AB5
A
313 324Right-handed alpha
Helix 15
AB6
A
331 343Right-handed alpha
Helix 16
AB7
A
359 370Right-handed 310
Helix 17
AB8
A
379 391Right-handed alpha
Helix 18
AB9
A
392 396Right-handed 310
Helix 19
AC1
B
57 71Right-handed alpha
Helix 20
AC2
B
72 75Right-handed 310
Helix 21
AC3
B
101 106Right-handed alpha
Helix 22
AC4
B
108 112Right-handed 310
Helix 23
AC5
B
113 122Right-handed alpha
Helix 24
AC6
B
154 164Right-handed alpha
Helix 25
AC7
B
186 190Right-handed 310
Helix 26
AC8
B
194 206Right-handed alpha
Helix 27
AC9
B
216 218Right-handed 310
Helix 28
AD1
B
219 235Right-handed alpha
Helix 29
AD2
B
251 262Right-handed alpha
Helix 30
AD3
B
263 269Right-handed alpha
Helix 31
AD4
B
313 323Right-handed alpha
Helix 32
AD5
B
324 326Right-handed 310
Helix 33
AD6
B
331 343Right-handed alpha
Helix 34
AD7
B
359 370Right-handed 310
Helix 35
AD8
B
379 391Right-handed alpha
Helix 36
AD9
B
392 396Right-handed 310
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There are 4 sheets in PDB entry 7JHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
208 214anti-parallel
Strand 3
A
176 184parallel
Strand 4
A
144 149parallel
Strand 5
A
240 245parallel
Strand 6
A
303 312anti-parallel
Strand 7
A
271 276anti-parallel
Strand 8
A
348 349parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
374 376anti-parallel
Strand 3
A
353 354parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
208 214anti-parallel
Strand 3
B
176 184parallel
Strand 4
B
144 149parallel
Strand 5
B
240 245parallel
Strand 6
B
303 312anti-parallel
Strand 7
B
271 276anti-parallel
Strand 8
B
348 349parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
374 376anti-parallel
Strand 3
B
353 354parallel
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