Analysis of interatomic Contacts of Structural Units in PDB entry:
7JI3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JI3 entry

There are 3 chains in PDB entry 7JI3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 65	ARG 334
B	ASN 65	ARG 334
C	ASN 65	ARG 334

There are 15 helices in PDB entry 7JI3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	99	Right-handed alpha
Helix 2	AA2	A	178	182	Right-handed 310
Helix 3	AA3	A	209	214	Right-handed alpha
Helix 4	AA4	A	217	229	Right-handed alpha
Helix 5	AA5	A	303	332	Right-handed alpha
Helix 6	AA6	B	66	99	Right-handed alpha
Helix 7	AA7	B	178	182	Right-handed 310
Helix 8	AA8	B	209	214	Right-handed alpha
Helix 9	AA9	B	217	229	Right-handed alpha
Helix 10	AB1	B	303	332	Right-handed alpha
Helix 11	AB2	C	66	99	Right-handed alpha
Helix 12	AB3	C	178	182	Right-handed 310
Helix 13	AB4	C	209	214	Right-handed alpha
Helix 14	AB5	C	217	229	Right-handed alpha
Helix 15	AB6	C	303	332	Right-handed alpha

There are 12 sheets in PDB entry 7JI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	108	first strand
Strand 2	A	292	299	anti-parallel
Strand 3	A	238	249	parallel
Strand 4	A	256	262	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	132	first strand
Strand 2	A	184	191	anti-parallel
Strand 3	A	280	288	anti-parallel
Strand 4	A	238	249	parallel
Strand 5	A	265	267	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	156	first strand
Strand 2	A	169	174	anti-parallel
Strand 3	A	116	119	anti-parallel
Strand 4	A	205	206	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	232	235	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	108	first strand
Strand 2	B	292	299	anti-parallel
Strand 3	B	238	249	parallel
Strand 4	B	256	260	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	132	first strand
Strand 2	B	184	191	anti-parallel
Strand 3	B	280	288	anti-parallel
Strand 4	B	238	249	parallel
Strand 5	B	265	267	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	156	first strand
Strand 2	B	169	174	anti-parallel
Strand 3	B	116	119	anti-parallel
Strand 4	B	205	206	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	203	first strand
Strand 2	B	232	235	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	108	first strand
Strand 2	C	292	299	anti-parallel
Strand 3	C	238	249	parallel
Strand 4	C	256	262	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	132	first strand
Strand 2	C	184	191	anti-parallel
Strand 3	C	280	288	anti-parallel
Strand 4	C	238	249	parallel
Strand 5	C	265	267	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	156	first strand
Strand 2	C	169	174	anti-parallel
Strand 3	C	116	119	anti-parallel
Strand 4	C	205	206	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	232	235	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JI3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JI3