Analysis of interatomic Contacts of Structural Units in PDB entry:
7JIC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JIC entry

There are 4 chains in PDB entry 7JIC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21LEU 313
B
 CYS 9LEU 226
H
 GLN 1PRO 219
L
 GLU 1GLU 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7JIC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
293 313Right-handed alpha
Helix 2
AA2
B
10 37Right-handed alpha
Helix 3
AA3
B
38 45Right-handed alpha
Helix 4
AA4
B
58 82Right-handed alpha
Helix 5
AA5
B
90 115Right-handed alpha
Helix 6
AA6
B
118 135Right-handed alpha
Helix 7
AA7
B
142 154Right-handed alpha
Helix 8
AA8
B
160 165Right-handed 310
Helix 9
AA9
B
181 224Right-handed alpha
Helix 10
AB1
H
61 64Right-handed 310
Helix 11
AB2
L
120 125Right-handed alpha
Helix 12
AB3
L
182 186Right-handed alpha
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There are 13 sheets in PDB entry 7JIC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
270 273parallel
Strand 3
A
257 261anti-parallel
Strand 4
A
49 53anti-parallel
Strand 5
A
60 65anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
239 242anti-parallel
Strand 4
A
71 75anti-parallel
Strand 5
A
80 84anti-parallel
Strand 6
A
196 197anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
108 115parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
211 217anti-parallel
Strand 5
A
227 229anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 123first strand
Strand 2
A
155 160parallel
Strand 3
A
163 164anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 5first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
115 117parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
92 98anti-parallel
Strand 5
H
106 109anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
126 130first strand
Strand 2
H
141 151anti-parallel
Strand 3
H
182 191anti-parallel
Strand 4
H
169 176anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
157 160first strand
Strand 2
H
200 205anti-parallel
Strand 3
H
213 217anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
69 74anti-parallel
Strand 4
L
61 66anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
84 88anti-parallel
Strand 4
L
33 37anti-parallel
Strand 5
L
44 47anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
128 135first strand
Strand 2
L
174 181anti-parallel
Strand 3
L
158 162anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
144 149first strand
Strand 2
L
190 196anti-parallel
Strand 3
L
204 209anti-parallel
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