Analysis of interatomic Contacts of Structural Units in PDB entry:
7JID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JID entry

There are 2 chains in PDB entry 7JID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 287
B
 GLY -1MET 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7JID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
66 72Right-handed 310
Helix 4
AA4
A
75 84Right-handed alpha
Helix 5
AA5
A
84 97Right-handed alpha
Helix 6
AA6
A
134 148Right-handed alpha
Helix 7
AA7
A
149 151Right-handed 310
Helix 8
AA8
A
171 179Right-handed alpha
Helix 9
AA9
A
191 205Right-handed alpha
Helix 10
AB1
A
220 232Right-handed alpha
Helix 11
AB2
A
242 250Right-handed alpha
Helix 12
AB3
A
261 268Right-handed alpha
Helix 13
AB4
A
273 285Right-handed alpha
Helix 14
AB5
B
10 23Right-handed alpha
Helix 15
AB6
B
36 48Right-handed alpha
Helix 16
AB7
B
66 72Right-handed 310
Helix 17
AB8
B
75 84Right-handed alpha
Helix 18
AB9
B
84 97Right-handed alpha
Helix 19
AC1
B
134 148Right-handed alpha
Helix 20
AC2
B
149 151Right-handed 310
Helix 21
AC3
B
171 179Right-handed alpha
Helix 22
AC4
B
191 205Right-handed alpha
Helix 23
AC5
B
220 232Right-handed alpha
Helix 24
AC6
B
242 250Right-handed alpha
Helix 25
AC7
B
261 268Right-handed alpha
Helix 26
AC8
B
273 284Right-handed alpha
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There are 4 sheets in PDB entry 7JID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
2 6parallel
Strand 3
A
51 54parallel
Strand 4
A
100 106parallel
Strand 5
A
154 159parallel
Strand 6
A
209 212parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
239 240parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
2 6parallel
Strand 3
B
51 54parallel
Strand 4
B
100 106parallel
Strand 5
B
154 159parallel
Strand 6
B
209 212parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 182first strand
Strand 2
B
239 240parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il