Analysis of interatomic Contacts of Structural Units in PDB entry:
7JIE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JIE entry

There are 6 chains in PDB entry 7JIE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 225	GLY 531
B	LYS 225	GLY 531
C	GLN 1	PRO 235
D	ASP 1	GLY 217
E	GLN 1	PRO 235
F	ASP 1	GLY 217

There are 25 helices in PDB entry 7JIE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	233	237	Right-handed 310
Helix 2	AA2	A	279	283	Right-handed 310
Helix 3	AA3	A	359	362	Right-handed 310
Helix 4	AA4	A	454	465	Right-handed alpha
Helix 5	AA5	B	233	237	Right-handed 310
Helix 6	AA6	B	279	283	Right-handed 310
Helix 7	AA7	B	359	362	Right-handed 310
Helix 8	AA8	B	454	465	Right-handed alpha
Helix 9	AA9	C	62	65	Right-handed 310
Helix 10	AB1	C	87	91	Right-handed 310
Helix 11	AB2	C	178	180	Right-handed 310
Helix 12	AB3	C	209	214	Right-handed alpha
Helix 13	AB4	C	223	226	Right-handed 310
Helix 14	AB5	D	84	88	Right-handed 310
Helix 15	AB6	D	126	132	Right-handed alpha
Helix 16	AB7	D	188	193	Right-handed alpha
Helix 17	AB8	E	62	65	Right-handed 310
Helix 18	AB9	E	87	91	Right-handed 310
Helix 19	AC1	E	151	155	Right-handed 310
Helix 20	AC2	E	178	180	Right-handed 310
Helix 21	AC3	E	209	211	Right-handed 310
Helix 22	AC4	E	223	226	Right-handed 310
Helix 23	AC5	F	84	88	Right-handed 310
Helix 24	AC6	F	126	132	Right-handed alpha
Helix 25	AC7	F	188	194	Right-handed alpha

There are 29 sheets in PDB entry 7JIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	429	437	anti-parallel
Strand 3	A	248	252	anti-parallel
Strand 4	A	505	506	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	429	437	anti-parallel
Strand 3	A	496	500	anti-parallel
Strand 4	A	485	492	anti-parallel
Strand 5	A	472	478	anti-parallel
Strand 6	A	514	521	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	292	first strand
Strand 2	A	298	303	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	344	352	anti-parallel
Strand 5	B	440	443	anti-parallel
Strand 6	B	381	389	parallel
Strand 7	B	286	292	anti-parallel
Strand 8	B	298	303	anti-parallel
Strand 9	B	364	369	anti-parallel
Strand 10	B	344	352	anti-parallel
Strand 11	A	440	443	anti-parallel
Strand 12	A	381	389	parallel
Strand 13	A	286	292	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	389	first strand
Strand 2	A	329	337	anti-parallel
Strand 3	A	344	352	anti-parallel
Strand 4	B	440	443	anti-parallel
Strand 5	B	381	389	parallel
Strand 6	B	329	337	anti-parallel
Strand 7	B	344	352	anti-parallel
Strand 8	A	440	443	anti-parallel
Strand 9	A	381	389	parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	443	first strand
Strand 2	B	344	352	anti-parallel
Strand 3	B	364	369	anti-parallel
Strand 4	B	298	303	anti-parallel
Strand 5	B	286	292	anti-parallel
Strand 6	B	381	389	anti-parallel
Strand 7	B	329	337	anti-parallel
Strand 8	B	344	352	anti-parallel
Strand 9	A	440	443	anti-parallel
Strand 10	A	381	389	parallel
Strand 11	A	286	292	anti-parallel
Strand 12	A	298	303	anti-parallel
Strand 13	A	364	369	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	429	437	anti-parallel
Strand 3	B	248	252	anti-parallel
Strand 4	B	505	506	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	429	437	anti-parallel
Strand 3	B	496	500	anti-parallel
Strand 4	B	485	492	anti-parallel
Strand 5	B	472	478	anti-parallel
Strand 6	B	514	521	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	79	83	anti-parallel
Strand 4	C	68	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	129	133	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	52	anti-parallel
Strand 6	C	57	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	129	133	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	122	125	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	157	167	anti-parallel
Strand 3	C	198	207	anti-parallel
Strand 4	C	185	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	157	167	anti-parallel
Strand 3	C	198	207	anti-parallel
Strand 4	C	191	192	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	176	first strand
Strand 2	C	216	222	anti-parallel
Strand 3	C	227	233	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	75	80	anti-parallel
Strand 4	D	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	107	111	parallel
Strand 3	D	89	95	anti-parallel
Strand 4	D	38	43	anti-parallel
Strand 5	D	49	54	anti-parallel
Strand 6	D	58	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	107	111	parallel
Strand 3	D	89	95	anti-parallel
Strand 4	D	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	134	144	anti-parallel
Strand 3	D	178	187	anti-parallel
Strand 4	D	164	168	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	159	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	196	202	anti-parallel
Strand 4	D	210	215	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	79	83	anti-parallel
Strand 4	E	68	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	129	133	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	129	133	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	122	125	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	146	first strand
Strand 2	E	157	167	anti-parallel
Strand 3	E	198	207	anti-parallel
Strand 4	E	185	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	146	first strand
Strand 2	E	157	167	anti-parallel
Strand 3	E	198	207	anti-parallel
Strand 4	E	191	192	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	176	first strand
Strand 2	E	217	222	anti-parallel
Strand 3	E	227	232	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	75	80	anti-parallel
Strand 4	F	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	107	111	parallel
Strand 3	F	89	95	anti-parallel
Strand 4	F	38	43	anti-parallel
Strand 5	F	50	54	anti-parallel
Strand 6	F	58	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	107	111	parallel
Strand 3	F	89	95	anti-parallel
Strand 4	F	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	123	first strand
Strand 2	F	134	144	anti-parallel
Strand 3	F	178	187	anti-parallel
Strand 4	F	164	168	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	159	first strand
Strand 2	F	150	155	anti-parallel
Strand 3	F	196	202	anti-parallel
Strand 4	F	210	215	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JIE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JIE