Analysis of interatomic Contacts of Structural Units in PDB entry:
7JIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JIJ entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 7JIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	GLY 7	PHE 373
A	VAL 13	ARG 173
A	SER 175	GLN 550
B	PRO 186	ILE 272
G	ASN 25	LEU 324

There are 51 helices in PDB entry 7JIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	18	34	Right-handed alpha
Helix 2	AA2	M	44	53	Right-handed alpha
Helix 3	AA3	M	67	70	Right-handed 310
Helix 4	AA4	M	71	76	Right-handed alpha
Helix 5	AA5	M	84	92	Right-handed alpha
Helix 6	AA6	M	94	98	Right-handed 310
Helix 7	AA7	M	130	132	Right-handed 310
Helix 8	AA8	M	133	142	Right-handed alpha
Helix 9	AA9	M	155	164	Right-handed alpha
Helix 10	AB1	M	165	167	Right-handed 310
Helix 11	AB2	M	187	203	Right-handed alpha
Helix 12	AB3	M	211	221	Right-handed alpha
Helix 13	AB4	M	233	238	Right-handed alpha
Helix 14	AB5	M	275	298	Right-handed alpha
Helix 15	AB6	M	306	314	Right-handed alpha
Helix 16	AB7	M	316	328	Right-handed alpha
Helix 17	AB8	M	336	355	Right-handed alpha
Helix 18	AB9	M	358	373	Right-handed alpha
Helix 19	AC1	A	51	57	Right-handed alpha
Helix 20	AC2	A	59	71	Right-handed alpha
Helix 21	AC3	A	103	111	Right-handed alpha
Helix 22	AC4	A	114	135	Right-handed alpha
Helix 23	AC5	A	143	145	Right-handed 310
Helix 24	AC6	A	185	189	Right-handed 310
Helix 25	AC7	A	193	212	Right-handed alpha
Helix 26	AC8	A	220	230	Right-handed alpha
Helix 27	AC9	A	240	251	Right-handed alpha
Helix 28	AD1	A	254	258	Right-handed 310
Helix 29	AD2	A	260	266	Right-handed alpha
Helix 30	AD3	A	267	272	Right-handed alpha
Helix 31	AD4	A	333	343	Right-handed alpha
Helix 32	AD5	A	349	356	Right-handed alpha
Helix 33	AD6	A	367	372	Right-handed alpha
Helix 34	AD7	A	407	422	Right-handed alpha
Helix 35	AD8	A	532	550	Right-handed alpha
Helix 36	AD9	G	28	36	Right-handed alpha
Helix 37	AE1	G	37	42	Right-handed alpha
Helix 38	AE2	G	56	68	Right-handed alpha
Helix 39	AE3	G	87	98	Right-handed alpha
Helix 40	AE4	G	106	111	Right-handed alpha
Helix 41	AE5	G	113	122	Right-handed alpha
Helix 42	AE6	G	137	149	Right-handed alpha
Helix 43	AE7	G	168	180	Right-handed alpha
Helix 44	AE8	G	186	190	Right-handed 310
Helix 45	AE9	G	192	197	Right-handed alpha
Helix 46	AF1	G	212	223	Right-handed alpha
Helix 47	AF2	G	246	252	Right-handed alpha
Helix 48	AF3	G	261	267	Right-handed alpha
Helix 49	AF4	G	268	270	Right-handed 310
Helix 50	AF5	G	284	296	Right-handed alpha
Helix 51	AF6	G	314	324	Right-handed alpha

There are 11 sheets in PDB entry 7JIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	37	40	first strand
Strand 2	M	9	12	parallel
Strand 3	M	61	65	parallel
Strand 4	M	264	268	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	100	101	first strand
Strand 2	M	104	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	120	first strand
Strand 2	M	244	247	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	43	50	anti-parallel
Strand 3	A	90	96	anti-parallel
Strand 4	A	81	86	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	147	149	anti-parallel
Strand 3	A	156	157	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	163	165	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	428	first strand
Strand 2	A	433	439	anti-parallel
Strand 3	A	446	457	anti-parallel
Strand 4	A	460	466	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	250	258	anti-parallel
Strand 3	B	263	271	anti-parallel
Strand 4	G	45	52	parallel
Strand 5	G	72	76	parallel
Strand 6	G	81	86	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	156	first strand
Strand 2	G	163	167	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	227	231	first strand
Strand 2	G	237	242	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	278	279	first strand
Strand 2	G	301	302	parallel
Strand 3	G	311	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JIJ