Analysis of interatomic Contacts of Structural Units in PDB entry:
7JJ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JJ0 entry

There are 4 chains in PDB entry 7JJ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LEU 306
B	MET 1	THR 393
C	SER 2	LEU 306
D	MET 1	THR 393

There are 53 helices in PDB entry 7JJ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	11	Right-handed 310
Helix 2	AA2	A	25	39	Right-handed alpha
Helix 3	AA3	A	63	72	Right-handed alpha
Helix 4	AA4	A	81	95	Right-handed alpha
Helix 5	AA5	A	108	120	Right-handed alpha
Helix 6	AA6	A	147	151	Right-handed 310
Helix 7	AA7	A	164	176	Right-handed alpha
Helix 8	AA8	A	195	205	Right-handed alpha
Helix 9	AA9	A	221	234	Right-handed alpha
Helix 10	AB1	A	259	264	Right-handed alpha
Helix 11	AB2	A	271	281	Right-handed alpha
Helix 12	AB3	A	291	303	Right-handed alpha
Helix 13	AB4	B	4	15	Right-handed alpha
Helix 14	AB5	B	27	39	Right-handed alpha
Helix 15	AB6	B	72	82	Right-handed alpha
Helix 16	AB7	B	140	147	Right-handed alpha
Helix 17	AB8	B	148	151	Right-handed 310
Helix 18	AB9	B	163	174	Right-handed alpha
Helix 19	AC1	B	179	198	Right-handed alpha
Helix 20	AC2	B	227	232	Right-handed 310
Helix 21	AC3	B	233	239	Right-handed alpha
Helix 22	AC4	B	246	255	Right-handed alpha
Helix 23	AC5	B	272	286	Right-handed alpha
Helix 24	AC6	B	301	315	Right-handed alpha
Helix 25	AC7	B	331	347	Right-handed alpha
Helix 26	AC8	B	360	370	Right-handed alpha
Helix 27	AC9	B	380	391	Right-handed alpha
Helix 28	AD1	C	2	11	Right-handed 310
Helix 29	AD2	C	25	39	Right-handed alpha
Helix 30	AD3	C	63	72	Right-handed alpha
Helix 31	AD4	C	81	95	Right-handed alpha
Helix 32	AD5	C	108	120	Right-handed alpha
Helix 33	AD6	C	147	151	Right-handed 310
Helix 34	AD7	C	164	176	Right-handed alpha
Helix 35	AD8	C	195	206	Right-handed alpha
Helix 36	AD9	C	221	234	Right-handed alpha
Helix 37	AE1	C	270	281	Right-handed alpha
Helix 38	AE2	C	291	303	Right-handed alpha
Helix 39	AE3	D	4	14	Right-handed alpha
Helix 40	AE4	D	27	39	Right-handed alpha
Helix 41	AE5	D	76	82	Right-handed alpha
Helix 42	AE6	D	139	147	Right-handed alpha
Helix 43	AE7	D	148	151	Right-handed 310
Helix 44	AE8	D	163	174	Right-handed alpha
Helix 45	AE9	D	179	198	Right-handed alpha
Helix 46	AF1	D	227	232	Right-handed 310
Helix 47	AF2	D	233	239	Right-handed alpha
Helix 48	AF3	D	246	255	Right-handed alpha
Helix 49	AF4	D	272	286	Right-handed alpha
Helix 50	AF5	D	301	315	Right-handed alpha
Helix 51	AF6	D	331	347	Right-handed alpha
Helix 52	AF7	D	360	370	Right-handed alpha
Helix 53	AF8	D	380	391	Right-handed alpha

There are 14 sheets in PDB entry 7JJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	58	61	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	17	21	parallel
Strand 5	A	75	78	parallel
Strand 6	A	99	102	parallel
Strand 7	A	126	128	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	144	first strand
Strand 2	A	134	137	anti-parallel
Strand 3	A	180	185	anti-parallel
Strand 4	A	156	160	parallel
Strand 5	A	211	217	parallel
Strand 6	A	242	247	parallel
Strand 7	A	284	285	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	103	107	anti-parallel
Strand 3	B	43	47	anti-parallel
Strand 4	B	67	70	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	87	89	anti-parallel
Strand 3	B	98	99	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	127	133	anti-parallel
Strand 3	B	116	122	anti-parallel
Strand 4	B	200	205	anti-parallel
Strand 5	B	221	225	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	216	218	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	290	295	anti-parallel
Strand 3	B	266	270	parallel
Strand 4	B	320	325	parallel
Strand 5	B	352	356	parallel
Strand 6	B	375	378	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	58	61	anti-parallel
Strand 3	C	41	46	parallel
Strand 4	C	17	21	parallel
Strand 5	C	75	78	parallel
Strand 6	C	99	102	parallel
Strand 7	C	126	128	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	144	first strand
Strand 2	C	134	137	anti-parallel
Strand 3	C	180	185	anti-parallel
Strand 4	C	156	160	parallel
Strand 5	C	211	217	parallel
Strand 6	C	242	247	parallel
Strand 7	C	284	285	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	25	first strand
Strand 2	D	103	106	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	D	87	89	anti-parallel
Strand 3	D	98	99	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	155	first strand
Strand 2	D	127	133	anti-parallel
Strand 3	D	116	122	anti-parallel
Strand 4	D	200	205	anti-parallel
Strand 5	D	221	225	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	216	218	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	261	first strand
Strand 2	D	290	295	anti-parallel
Strand 3	D	266	270	parallel
Strand 4	D	320	326	parallel
Strand 5	D	352	357	parallel
Strand 6	D	375	378	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JJ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JJ0