Analysis of interatomic Contacts of Structural Units in PDB entry:
7JJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JJ1 entry

There are 3 chains in PDB entry 7JJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ARG 448
B
 PRO 5ALA 450
C
 ASN 7MET 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 7JJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 28Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
58 68Right-handed alpha
Helix 4
AA4
A
76 81Right-handed 310
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
A
95 107Right-handed alpha
Helix 7
AA7
A
108 112Right-handed 310
Helix 8
AA8
A
113 133Right-handed alpha
Helix 9
AA9
A
141 159Right-handed alpha
Helix 10
AB1
A
159 164Right-handed alpha
Helix 11
AB2
A
166 180Right-handed alpha
Helix 12
AB3
A
183 188Right-handed alpha
Helix 13
AB4
A
193 220Right-handed alpha
Helix 14
AB5
A
226 233Right-handed alpha
Helix 15
AB6
A
243 276Right-handed alpha
Helix 16
AB7
A
276 294Right-handed alpha
Helix 17
AB8
A
297 301Right-handed 310
Helix 18
AB9
A
305 319Right-handed alpha
Helix 19
AC1
A
349 354Right-handed alpha
Helix 20
AC2
A
367 372Right-handed 310
Helix 21
AC3
A
376 380Right-handed 310
Helix 22
AC4
A
389 393Right-handed 310
Helix 23
AC5
A
396 414Right-handed alpha
Helix 24
AC6
B
21 28Right-handed alpha
Helix 25
AC7
B
28 41Right-handed alpha
Helix 26
AC8
B
58 68Right-handed alpha
Helix 27
AC9
B
77 81Right-handed 310
Helix 28
AD1
B
82 87Right-handed alpha
Helix 29
AD2
B
90 94Right-handed 310
Helix 30
AD3
B
96 106Right-handed alpha
Helix 31
AD4
B
107 110Right-handed 310
Helix 32
AD5
B
111 133Right-handed alpha
Helix 33
AD6
B
140 158Right-handed alpha
Helix 34
AD7
B
159 164Right-handed alpha
Helix 35
AD8
B
168 179Right-handed alpha
Helix 36
AD9
B
183 187Right-handed 310
Helix 37
AE1
B
193 216Right-handed alpha
Helix 38
AE2
B
229 233Right-handed 310
Helix 39
AE3
B
243 275Right-handed alpha
Helix 40
AE4
B
276 294Right-handed alpha
Helix 41
AE5
B
305 319Right-handed alpha
Helix 42
AE6
B
349 354Right-handed alpha
Helix 43
AE7
B
367 372Right-handed 310
Helix 44
AE8
B
389 393Right-handed 310
Helix 45
AE9
B
396 414Right-handed alpha
Helix 46
AF1
B
422 426Right-handed 310
Helix 47
AF2
C
21 28Right-handed alpha
Helix 48
AF3
C
28 41Right-handed alpha
Helix 49
AF4
C
58 68Right-handed alpha
Helix 50
AF5
C
76 81Right-handed 310
Helix 51
AF6
C
82 87Right-handed alpha
Helix 52
AF7
C
90 94Right-handed 310
Helix 53
AF8
C
95 107Right-handed alpha
Helix 54
AF9
C
108 111Right-handed 310
Helix 55
AG1
C
114 133Right-handed alpha
Helix 56
AG2
C
141 158Right-handed alpha
Helix 57
AG3
C
159 164Right-handed alpha
Helix 58
AG4
C
166 180Right-handed alpha
Helix 59
AG5
C
181 187Right-handed 310
Helix 60
AG6
C
193 219Right-handed alpha
Helix 61
AG7
C
226 233Right-handed alpha
Helix 62
AG8
C
243 276Right-handed alpha
Helix 63
AG9
C
276 295Right-handed alpha
Helix 64
AH1
C
298 303Right-handed alpha
Helix 65
AH2
C
305 319Right-handed alpha
Helix 66
AH3
C
349 354Right-handed alpha
Helix 67
AH4
C
367 372Right-handed 310
Helix 68
AH5
C
389 393Right-handed 310
Helix 69
AH6
C
396 414Right-handed alpha
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There are 12 sheets in PDB entry 7JJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
345 348parallel
Strand 4
A
325 329anti-parallel
Strand 5
A
73 74anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
442 447anti-parallel
Strand 3
A
415 419anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
338 340anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
436 437anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 48first strand
Strand 2
B
51 56anti-parallel
Strand 3
B
345 348parallel
Strand 4
B
325 329anti-parallel
Strand 5
B
73 74anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 139first strand
Strand 2
B
443 447anti-parallel
Strand 3
B
415 419anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
338 340anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 429first strand
Strand 2
B
436 437anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 48first strand
Strand 2
C
51 56anti-parallel
Strand 3
C
345 348parallel
Strand 4
C
325 329anti-parallel
Strand 5
C
73 74anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 140first strand
Strand 2
C
442 447anti-parallel
Strand 3
C
415 419anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
333 335first strand
Strand 2
C
338 340anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
428 429first strand
Strand 2
C
436 437anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il