Analysis of interatomic Contacts of Structural Units in PDB entry:
7JJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JJ9 entry

There is 1 chain in PDB entry 7JJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 27HIS 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7JJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 47Right-handed alpha
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
68 77Right-handed alpha
Helix 4
AA4
A
91 100Right-handed alpha
Helix 5
AA5
A
140 143Right-handed 310
Helix 6
AA6
A
144 163Right-handed alpha
Helix 7
AA7
A
166 193Right-handed alpha
Helix 8
AA8
A
207 215Right-handed alpha
Helix 9
AA9
A
231 246Right-handed alpha
Helix 10
AB1
A
257 267Right-handed alpha
Helix 11
AB2
A
282 288Right-handed alpha
Helix 12
AB3
A
291 308Right-handed alpha
Helix 13
AB4
A
331 335Right-handed 310
Helix 14
AB5
A
339 344Right-handed 310
Helix 15
AB6
A
350 356Right-handed alpha
Helix 16
AB7
A
359 371Right-handed alpha
Helix 17
AB8
A
374 387Right-handed alpha
Helix 18
AB9
A
441 444Right-handed 310
Helix 19
AC1
A
470 476Right-handed alpha
Helix 20
AC2
A
490 499Right-handed alpha
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There are 3 sheets in PDB entry 7JJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
29 33parallel
Strand 3
A
80 83parallel
Strand 4
A
105 108parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
199 202parallel
Strand 3
A
249 252parallel
Strand 4
A
271 274parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
399 404anti-parallel
Strand 4
A
407 422anti-parallel
Strand 5
A
428 436anti-parallel
Strand 6
A
446 450anti-parallel
Strand 7
A
462 467anti-parallel
Strand 8
A
483 486anti-parallel
Strand 9
A
345 349anti-parallel
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