Analysis of interatomic Contacts of Structural Units in PDB entry:
7JJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JJA entry

There is 1 chain in PDB entry 7JJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 321ALA 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7JJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
324 328Right-handed 310
Helix 2
AA2
A
331 335Right-handed 310
Helix 3
AA3
A
339 344Right-handed 310
Helix 4
AA4
A
350 356Right-handed alpha
Helix 5
AA5
A
359 371Right-handed alpha
Helix 6
AA6
A
374 387Right-handed alpha
Helix 7
AA7
A
441 444Right-handed 310
Helix 8
AA8
A
470 475Right-handed alpha
Helix 9
AA9
A
490 500Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 7JJA.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
390 395anti-parallel
Strand 3
A
399 404anti-parallel
Strand 4
A
407 422anti-parallel
Strand 5
A
428 436anti-parallel
Strand 6
A
446 450anti-parallel
Strand 7
A
462 467anti-parallel
Strand 8
A
483 486anti-parallel
Strand 9
A
345 349anti-parallel
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