Analysis of interatomic Contacts of Structural Units in PDB entry:
7JJC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JJC entry

There are 8 chains in PDB entry 7JJC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -3	THR 427
B	GLY -10	THR 427
C	GLY -3	THR 427
D	GLY -10	THR 427
E	ARG 683	ARG 685
F	ARG 683	ARG 685
G	ASN 679	ARG 685
H	ARG 683	ARG 685

There are 10 helices in PDB entry 7JJC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	287	289	Right-handed 310
Helix 2	AA2	A	298	307	Right-handed 310
Helix 3	AA3	B	-4	0	Right-handed 310
Helix 4	AA4	B	287	289	Right-handed 310
Helix 5	AA5	B	298	306	Right-handed 310
Helix 6	AA6	C	287	289	Right-handed 310
Helix 7	AA7	C	298	307	Right-handed 310
Helix 8	AA8	D	-4	0	Right-handed 310
Helix 9	AA9	D	287	289	Right-handed 310
Helix 10	AB1	D	298	307	Right-handed 310

There are 15 sheets in PDB entry 7JJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	352	363	anti-parallel
Strand 3	A	370	371	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	352	363	anti-parallel
Strand 3	A	391	412	anti-parallel
Strand 4	A	326	342	anti-parallel
Strand 5	A	291	293	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	293	first strand
Strand 2	A	326	342	anti-parallel
Strand 3	A	418	427	anti-parallel
Strand 4	A	0	278	anti-parallel
Strand 5	B	391	412	anti-parallel
Strand 6	B	352	363	anti-parallel
Strand 7	B	370	371	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	B	352	363	anti-parallel
Strand 3	B	381	382	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	352	363	anti-parallel
Strand 3	B	391	412	anti-parallel
Strand 4	B	326	342	anti-parallel
Strand 5	B	291	293	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	293	first strand
Strand 2	B	326	342	anti-parallel
Strand 3	B	418	424	anti-parallel
Strand 4	B	277	278	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	377	378	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	C	352	363	anti-parallel
Strand 3	C	370	371	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	382	first strand
Strand 2	C	352	363	anti-parallel
Strand 3	C	391	412	anti-parallel
Strand 4	C	326	342	anti-parallel
Strand 5	C	291	293	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	293	first strand
Strand 2	C	326	342	anti-parallel
Strand 3	C	418	427	anti-parallel
Strand 4	C	0	278	anti-parallel
Strand 5	D	391	412	anti-parallel
Strand 6	D	352	363	anti-parallel
Strand 7	D	370	371	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	345	first strand
Strand 2	D	352	363	anti-parallel
Strand 3	D	381	382	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	382	first strand
Strand 2	D	352	363	anti-parallel
Strand 3	D	391	412	anti-parallel
Strand 4	D	326	342	anti-parallel
Strand 5	D	291	293	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	293	first strand
Strand 2	D	326	342	anti-parallel
Strand 3	D	418	424	anti-parallel
Strand 4	D	277	278	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	377	378	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	D	377	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JJC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JJC