Analysis of interatomic Contacts of Structural Units in PDB entry:
7JJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JJN entry

There are 2 chains in PDB entry 7JJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 55TYR 568
B
 TYR 55TYR 568
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 7JJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 65Right-handed alpha
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
97 104Right-handed alpha
Helix 4
AA4
A
104 112Right-handed alpha
Helix 5
AA5
A
144 158Right-handed alpha
Helix 6
AA6
A
175 188Right-handed alpha
Helix 7
AA7
A
199 204Right-handed 310
Helix 8
AA8
A
240 257Right-handed alpha
Helix 9
AA9
A
266 270Right-handed 310
Helix 10
AB1
A
274 293Right-handed alpha
Helix 11
AB2
A
305 310Right-handed alpha
Helix 12
AB3
A
311 316Right-handed 310
Helix 13
AB4
A
322 326Right-handed 310
Helix 14
AB5
A
330 337Right-handed alpha
Helix 15
AB6
A
343 360Right-handed alpha
Helix 16
AB7
A
378 383Right-handed 310
Helix 17
AB8
A
387 401Right-handed alpha
Helix 18
AB9
A
411 415Right-handed 310
Helix 19
AC1
A
422 427Right-handed 310
Helix 20
AC2
A
456 462Right-handed alpha
Helix 21
AC3
A
466 481Right-handed alpha
Helix 22
AC4
A
481 487Right-handed alpha
Helix 23
AC5
A
493 496Right-handed 310
Helix 24
AC6
A
528 531Right-handed 310
Helix 25
AC7
B
58 65Right-handed alpha
Helix 26
AC8
B
83 88Right-handed alpha
Helix 27
AC9
B
97 103Right-handed alpha
Helix 28
AD1
B
104 112Right-handed alpha
Helix 29
AD2
B
139 143Right-handed 310
Helix 30
AD3
B
144 158Right-handed alpha
Helix 31
AD4
B
175 187Right-handed alpha
Helix 32
AD5
B
199 204Right-handed 310
Helix 33
AD6
B
240 256Right-handed alpha
Helix 34
AD7
B
266 270Right-handed 310
Helix 35
AD8
B
274 291Right-handed alpha
Helix 36
AD9
B
305 310Right-handed alpha
Helix 37
AE1
B
311 316Right-handed 310
Helix 38
AE2
B
322 326Right-handed 310
Helix 39
AE3
B
330 337Right-handed alpha
Helix 40
AE4
B
343 359Right-handed alpha
Helix 41
AE5
B
378 383Right-handed 310
Helix 42
AE6
B
387 401Right-handed alpha
Helix 43
AE7
B
411 415Right-handed 310
Helix 44
AE8
B
421 427Right-handed 310
Helix 45
AE9
B
456 462Right-handed alpha
Helix 46
AF1
B
466 481Right-handed alpha
Helix 47
AF2
B
482 487Right-handed alpha
Helix 48
AF3
B
493 496Right-handed 310
Helix 49
AF4
B
528 531Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 7JJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
297 300parallel
Strand 3
A
261 264parallel
Strand 4
A
161 166parallel
Strand 5
A
115 118parallel
Strand 6
A
78 82parallel
Strand 7
A
406 409parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
224 226anti-parallel
Strand 3
A
215 217anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
501 507anti-parallel
Strand 3
A
510 517anti-parallel
Strand 4
A
559 566anti-parallel
Strand 5
A
532 540anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 526first strand
Strand 2
A
552 555anti-parallel
Strand 3
A
547 549anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 320first strand
Strand 2
B
297 300parallel
Strand 3
B
261 264parallel
Strand 4
B
161 166parallel
Strand 5
B
115 118parallel
Strand 6
B
78 82parallel
Strand 7
B
406 409parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
224 226anti-parallel
Strand 3
B
215 217anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 491first strand
Strand 2
B
501 507anti-parallel
Strand 3
B
510 517anti-parallel
Strand 4
B
559 565anti-parallel
Strand 5
B
533 540anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
523 526first strand
Strand 2
B
552 555anti-parallel
Strand 3
B
547 549anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il