Analysis of interatomic Contacts of Structural Units in PDB entry:
7JK2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JK2 entry

There are 9 chains in PDB entry 7JK2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PHE 276	GLU 616
C	MET 1	TRP 721
D	PRO 2	SER 456
E	MET 1	LEU 456
F	GLU 223	LYS 239
A	THR 519	VAL 919
G	ARG 249	LEU 660
H	T -3	T 29
I	A 38	A 70

There are132 helices in PDB entry 7JK2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	280	285	Right-handed alpha
Helix 2	AA2	B	324	338	Right-handed alpha
Helix 3	AA3	B	339	349	Right-handed alpha
Helix 4	AA4	B	361	372	Right-handed alpha
Helix 5	AA5	B	389	401	Right-handed alpha
Helix 6	AA6	B	410	423	Right-handed alpha
Helix 7	AA7	B	444	456	Right-handed alpha
Helix 8	AA8	B	470	474	Right-handed 310
Helix 9	AA9	B	476	483	Right-handed alpha
Helix 10	AB1	B	496	501	Right-handed alpha
Helix 11	AB2	B	516	525	Right-handed alpha
Helix 12	AB3	B	527	544	Right-handed alpha
Helix 13	AB4	B	554	565	Right-handed alpha
Helix 14	AB5	B	570	584	Right-handed alpha
Helix 15	AB6	B	604	615	Right-handed alpha
Helix 16	AB7	C	41	46	Right-handed alpha
Helix 17	AB8	C	47	88	Right-handed alpha
Helix 18	AB9	C	106	108	Right-handed 310
Helix 19	AC1	C	109	122	Right-handed alpha
Helix 20	AC2	C	139	159	Right-handed alpha
Helix 21	AC3	C	184	197	Right-handed alpha
Helix 22	AC4	C	216	230	Right-handed alpha
Helix 23	AC5	C	245	253	Right-handed alpha
Helix 24	AC6	C	254	259	Right-handed alpha
Helix 25	AC7	C	270	282	Right-handed alpha
Helix 26	AC8	C	293	307	Right-handed alpha
Helix 27	AC9	C	310	327	Right-handed alpha
Helix 28	AD1	C	328	335	Right-handed 310
Helix 29	AD2	C	337	347	Right-handed alpha
Helix 30	AD3	C	349	358	Right-handed alpha
Helix 31	AD4	C	362	368	Right-handed alpha
Helix 32	AD5	C	383	416	Right-handed alpha
Helix 33	AD6	C	425	436	Right-handed alpha
Helix 34	AD7	C	441	453	Right-handed alpha
Helix 35	AD8	C	455	477	Right-handed alpha
Helix 36	AD9	C	484	508	Right-handed alpha
Helix 37	AE1	C	563	576	Right-handed alpha
Helix 38	AE2	C	599	607	Right-handed alpha
Helix 39	AE3	C	609	620	Right-handed alpha
Helix 40	AE4	C	621	626	Right-handed alpha
Helix 41	AE5	C	643	654	Right-handed alpha
Helix 42	AE6	C	660	672	Right-handed alpha
Helix 43	AE7	C	688	703	Right-handed alpha
Helix 44	AE8	D	3	21	Right-handed alpha
Helix 45	AE9	D	31	45	Right-handed alpha
Helix 46	AF1	D	61	74	Right-handed alpha
Helix 47	AF2	D	75	77	Right-handed 310
Helix 48	AF3	D	95	107	Right-handed alpha
Helix 49	AF4	D	120	135	Right-handed alpha
Helix 50	AF5	D	148	154	Right-handed alpha
Helix 51	AF6	D	155	157	Right-handed 310
Helix 52	AF7	D	158	165	Right-handed alpha
Helix 53	AF8	D	185	189	Right-handed 310
Helix 54	AF9	D	191	198	Right-handed alpha
Helix 55	AG1	D	211	224	Right-handed alpha
Helix 56	AG2	D	227	244	Right-handed alpha
Helix 57	AG3	D	250	254	Right-handed 310
Helix 58	AG4	D	264	280	Right-handed alpha
Helix 59	AG5	D	282	295	Right-handed alpha
Helix 60	AG6	D	297	310	Right-handed alpha
Helix 61	AG7	D	320	333	Right-handed alpha
Helix 62	AG8	D	335	341	Right-handed alpha
Helix 63	AG9	D	344	362	Right-handed alpha
Helix 64	AH1	D	367	380	Right-handed alpha
Helix 65	AH2	D	389	403	Right-handed alpha
Helix 66	AH3	D	432	443	Right-handed alpha
Helix 67	AH4	D	447	454	Right-handed alpha
Helix 68	AH5	E	2	9	Right-handed alpha
Helix 69	AH6	E	15	27	Right-handed alpha
Helix 70	AH7	E	47	62	Right-handed alpha
Helix 71	AH8	E	76	89	Right-handed alpha
Helix 72	AH9	E	92	96	Right-handed 310
Helix 73	AI1	E	100	110	Right-handed alpha
Helix 74	AI2	E	128	134	Right-handed 310
Helix 75	AI3	E	137	143	Right-handed alpha
Helix 76	AI4	E	144	150	Right-handed alpha
Helix 77	AI5	E	162	166	Right-handed 310
Helix 78	AI6	E	184	194	Right-handed alpha
Helix 79	AI7	E	195	206	Right-handed alpha
Helix 80	AI8	E	212	218	Right-handed alpha
Helix 81	AI9	E	222	238	Right-handed alpha
Helix 82	AJ1	E	243	259	Right-handed alpha
Helix 83	AJ2	E	259	265	Right-handed alpha
Helix 84	AJ3	E	275	287	Right-handed alpha
Helix 85	AJ4	E	322	338	Right-handed alpha
Helix 86	AJ5	E	339	341	Right-handed 310
Helix 87	AJ6	E	342	347	Right-handed alpha
Helix 88	AJ7	E	382	394	Right-handed alpha
Helix 89	AJ8	E	400	413	Right-handed alpha
Helix 90	AJ9	E	437	449	Right-handed alpha
Helix 91	AK1	F	224	238	Right-handed alpha
Helix 92	AK2	A	520	529	Right-handed alpha
Helix 93	AK3	A	550	559	Right-handed alpha
Helix 94	AK4	A	571	588	Right-handed alpha
Helix 95	AK5	A	603	621	Right-handed alpha
Helix 96	AK6	A	641	652	Right-handed alpha
Helix 97	AK7	A	657	671	Right-handed alpha
Helix 98	AK8	A	686	689	Right-handed 310
Helix 99	AK9	A	695	703	Right-handed alpha
Helix 100	AL1	A	704	706	Right-handed 310
Helix 101	AL2	A	721	726	Right-handed alpha
Helix 102	AL3	A	728	736	Right-handed alpha
Helix 103	AL4	A	746	759	Right-handed alpha
Helix 104	AL5	A	765	778	Right-handed alpha
Helix 105	AL6	A	782	800	Right-handed alpha
Helix 106	AL7	A	806	818	Right-handed alpha
Helix 107	AL8	A	822	828	Right-handed alpha
Helix 108	AL9	A	830	848	Right-handed alpha
Helix 109	AM1	A	854	869	Right-handed alpha
Helix 110	AM2	A	874	888	Right-handed alpha
Helix 111	AM3	A	909	919	Right-handed alpha
Helix 112	AM4	G	250	260	Right-handed alpha
Helix 113	AM5	G	271	287	Right-handed alpha
Helix 114	AM6	G	302	311	Right-handed alpha
Helix 115	AM7	G	312	317	Right-handed 310
Helix 116	AM8	G	335	345	Right-handed alpha
Helix 117	AM9	G	352	366	Right-handed alpha
Helix 118	AN1	G	378	382	Right-handed 310
Helix 119	AN2	G	386	393	Right-handed alpha
Helix 120	AN3	G	394	398	Right-handed 310
Helix 121	AN4	G	413	418	Right-handed alpha
Helix 122	AN5	G	419	425	Right-handed 310
Helix 123	AN6	G	439	453	Right-handed alpha
Helix 124	AN7	G	461	476	Right-handed alpha
Helix 125	AN8	G	478	498	Right-handed alpha
Helix 126	AN9	G	530	542	Right-handed alpha
Helix 127	AO1	G	557	573	Right-handed alpha
Helix 128	AO2	G	581	595	Right-handed alpha
Helix 129	AO3	G	601	614	Right-handed alpha
Helix 130	AO4	G	625	628	Right-handed 310
Helix 131	AO5	G	636	645	Right-handed alpha
Helix 132	AO6	G	646	654	Right-handed alpha

There are 12 sheets in PDB entry 7JK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	488	first strand
Strand 2	B	352	355	parallel
Strand 3	B	461	465	parallel
Strand 4	B	430	435	parallel
Strand 5	B	377	382	parallel
Strand 6	C	11	14	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	590	first strand
Strand 2	B	598	600	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	204	209	parallel
Strand 3	C	236	240	parallel
Strand 4	C	98	102	parallel
Strand 5	C	266	267	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	659	first strand
Strand 2	C	716	718	anti-parallel
Strand 3	C	706	708	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	89	first strand
Strand 2	D	141	147	parallel
Strand 3	D	176	180	parallel
Strand 4	D	50	55	parallel
Strand 5	D	202	204	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	408	first strand
Strand 2	D	427	429	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	70	first strand
Strand 2	E	120	126	parallel
Strand 3	E	153	159	parallel
Strand 4	E	36	41	parallel
Strand 5	E	176	180	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	380	381	first strand
Strand 2	E	431	434	anti-parallel
Strand 3	E	416	420	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	633	first strand
Strand 2	A	678	684	parallel
Strand 3	A	711	717	parallel
Strand 4	A	592	597	parallel
Strand 5	A	739	741	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	852	853	first strand
Strand 2	A	903	906	anti-parallel
Strand 3	A	891	892	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	320	326	first strand
Strand 2	G	370	376	parallel
Strand 3	G	403	409	parallel
Strand 4	G	291	297	parallel
Strand 5	G	431	435	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	579	580	first strand
Strand 2	G	630	631	anti-parallel
Strand 3	G	620	621	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JK2

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JK2