Analysis of interatomic Contacts of Structural Units in PDB entry:
7JK3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JK3 entry

There are 9 chains in PDB entry 7JK3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PHE 276	GLU 616
C	MET 1	TRP 721
D	PRO 2	SER 456
E	MET 1	LEU 456
F	GLU 223	LYS 239
A	THR 519	VAL 919
G	ARG 249	LEU 660
H	T 1	T 33
I	A 34	A 66

There are137 helices in PDB entry 7JK3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	280	285	Right-handed alpha
Helix 2	AA2	B	324	338	Right-handed alpha
Helix 3	AA3	B	339	349	Right-handed alpha
Helix 4	AA4	B	361	372	Right-handed alpha
Helix 5	AA5	B	389	400	Right-handed alpha
Helix 6	AA6	B	410	424	Right-handed alpha
Helix 7	AA7	B	444	455	Right-handed alpha
Helix 8	AA8	B	470	475	Right-handed 310
Helix 9	AA9	B	476	483	Right-handed alpha
Helix 10	AB1	B	516	524	Right-handed alpha
Helix 11	AB2	B	527	544	Right-handed alpha
Helix 12	AB3	B	554	565	Right-handed alpha
Helix 13	AB4	B	570	584	Right-handed alpha
Helix 14	AB5	B	604	615	Right-handed alpha
Helix 15	AB6	C	41	46	Right-handed alpha
Helix 16	AB7	C	47	88	Right-handed alpha
Helix 17	AB8	C	106	122	Right-handed alpha
Helix 18	AB9	C	133	137	Right-handed 310
Helix 19	AC1	C	139	159	Right-handed alpha
Helix 20	AC2	C	179	183	Right-handed 310
Helix 21	AC3	C	184	196	Right-handed alpha
Helix 22	AC4	C	216	230	Right-handed alpha
Helix 23	AC5	C	245	253	Right-handed alpha
Helix 24	AC6	C	254	259	Right-handed alpha
Helix 25	AC7	C	270	282	Right-handed alpha
Helix 26	AC8	C	293	307	Right-handed alpha
Helix 27	AC9	C	310	327	Right-handed alpha
Helix 28	AD1	C	328	335	Right-handed 310
Helix 29	AD2	C	337	346	Right-handed alpha
Helix 30	AD3	C	349	357	Right-handed alpha
Helix 31	AD4	C	362	367	Right-handed alpha
Helix 32	AD5	C	372	381	Right-handed alpha
Helix 33	AD6	C	383	416	Right-handed alpha
Helix 34	AD7	C	425	436	Right-handed alpha
Helix 35	AD8	C	437	440	Right-handed 310
Helix 36	AD9	C	441	453	Right-handed alpha
Helix 37	AE1	C	455	477	Right-handed alpha
Helix 38	AE2	C	484	508	Right-handed alpha
Helix 39	AE3	C	563	576	Right-handed alpha
Helix 40	AE4	C	576	581	Right-handed alpha
Helix 41	AE5	C	590	593	Right-handed 310
Helix 42	AE6	C	599	607	Right-handed alpha
Helix 43	AE7	C	609	620	Right-handed alpha
Helix 44	AE8	C	621	626	Right-handed alpha
Helix 45	AE9	C	643	653	Right-handed alpha
Helix 46	AF1	C	661	672	Right-handed alpha
Helix 47	AF2	C	688	703	Right-handed alpha
Helix 48	AF3	D	3	21	Right-handed alpha
Helix 49	AF4	D	31	45	Right-handed alpha
Helix 50	AF5	D	62	74	Right-handed alpha
Helix 51	AF6	D	75	77	Right-handed 310
Helix 52	AF7	D	95	107	Right-handed alpha
Helix 53	AF8	D	120	134	Right-handed alpha
Helix 54	AF9	D	148	154	Right-handed alpha
Helix 55	AG1	D	158	165	Right-handed alpha
Helix 56	AG2	D	185	189	Right-handed 310
Helix 57	AG3	D	191	198	Right-handed alpha
Helix 58	AG4	D	211	222	Right-handed alpha
Helix 59	AG5	D	227	244	Right-handed alpha
Helix 60	AG6	D	250	254	Right-handed 310
Helix 61	AG7	D	257	261	Right-handed 310
Helix 62	AG8	D	264	280	Right-handed alpha
Helix 63	AG9	D	282	295	Right-handed alpha
Helix 64	AH1	D	297	310	Right-handed alpha
Helix 65	AH2	D	320	333	Right-handed alpha
Helix 66	AH3	D	335	341	Right-handed alpha
Helix 67	AH4	D	344	362	Right-handed alpha
Helix 68	AH5	D	367	380	Right-handed alpha
Helix 69	AH6	D	389	403	Right-handed alpha
Helix 70	AH7	D	432	443	Right-handed alpha
Helix 71	AH8	D	447	456	Right-handed alpha
Helix 72	AH9	E	2	9	Right-handed alpha
Helix 73	AI1	E	15	26	Right-handed alpha
Helix 74	AI2	E	47	62	Right-handed alpha
Helix 75	AI3	E	76	89	Right-handed alpha
Helix 76	AI4	E	100	110	Right-handed alpha
Helix 77	AI5	E	127	131	Right-handed 310
Helix 78	AI6	E	138	144	Right-handed alpha
Helix 79	AI7	E	144	150	Right-handed alpha
Helix 80	AI8	E	162	166	Right-handed 310
Helix 81	AI9	E	184	193	Right-handed alpha
Helix 82	AJ1	E	195	205	Right-handed alpha
Helix 83	AJ2	E	212	220	Right-handed alpha
Helix 84	AJ3	E	222	238	Right-handed alpha
Helix 85	AJ4	E	243	259	Right-handed alpha
Helix 86	AJ5	E	259	264	Right-handed alpha
Helix 87	AJ6	E	275	287	Right-handed alpha
Helix 88	AJ7	E	288	290	Right-handed 310
Helix 89	AJ8	E	322	337	Right-handed alpha
Helix 90	AJ9	E	342	347	Right-handed alpha
Helix 91	AK1	E	381	394	Right-handed alpha
Helix 92	AK2	E	400	412	Right-handed alpha
Helix 93	AK3	E	438	449	Right-handed alpha
Helix 94	AK4	F	224	238	Right-handed alpha
Helix 95	AK5	A	520	529	Right-handed alpha
Helix 96	AK6	A	550	559	Right-handed alpha
Helix 97	AK7	A	571	589	Right-handed alpha
Helix 98	AK8	A	604	621	Right-handed alpha
Helix 99	AK9	A	635	637	Right-handed 310
Helix 100	AL1	A	641	650	Right-handed alpha
Helix 101	AL2	A	657	671	Right-handed alpha
Helix 102	AL3	A	686	689	Right-handed 310
Helix 103	AL4	A	695	703	Right-handed alpha
Helix 104	AL5	A	704	706	Right-handed 310
Helix 105	AL6	A	721	726	Right-handed alpha
Helix 106	AL7	A	728	735	Right-handed alpha
Helix 107	AL8	A	748	759	Right-handed alpha
Helix 108	AL9	A	765	777	Right-handed alpha
Helix 109	AM1	A	782	800	Right-handed alpha
Helix 110	AM2	A	806	818	Right-handed alpha
Helix 111	AM3	A	823	828	Right-handed alpha
Helix 112	AM4	A	830	848	Right-handed alpha
Helix 113	AM5	A	854	869	Right-handed alpha
Helix 114	AM6	A	874	888	Right-handed alpha
Helix 115	AM7	A	909	918	Right-handed alpha
Helix 116	AM8	G	250	260	Right-handed alpha
Helix 117	AM9	G	272	287	Right-handed alpha
Helix 118	AN1	G	302	310	Right-handed alpha
Helix 119	AN2	G	313	319	Right-handed alpha
Helix 120	AN3	G	332	334	Right-handed 310
Helix 121	AN4	G	335	345	Right-handed alpha
Helix 122	AN5	G	352	366	Right-handed alpha
Helix 123	AN6	G	378	381	Right-handed 310
Helix 124	AN7	G	386	393	Right-handed alpha
Helix 125	AN8	G	394	398	Right-handed 310
Helix 126	AN9	G	413	418	Right-handed alpha
Helix 127	AO1	G	420	425	Right-handed 310
Helix 128	AO2	G	439	453	Right-handed alpha
Helix 129	AO3	G	461	476	Right-handed alpha
Helix 130	AO4	G	478	498	Right-handed alpha
Helix 131	AO5	G	530	542	Right-handed alpha
Helix 132	AO6	G	557	573	Right-handed alpha
Helix 133	AO7	G	580	595	Right-handed alpha
Helix 134	AO8	G	601	614	Right-handed alpha
Helix 135	AO9	G	636	645	Right-handed alpha
Helix 136	AP1	G	646	654	Right-handed alpha
Helix 137	AP2	G	656	660	Right-handed 310

There are 13 sheets in PDB entry 7JK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	488	first strand
Strand 2	B	353	355	parallel
Strand 3	B	460	465	parallel
Strand 4	B	430	435	parallel
Strand 5	B	377	382	parallel
Strand 6	C	11	13	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	590	first strand
Strand 2	B	598	600	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	204	208	parallel
Strand 3	C	236	240	parallel
Strand 4	C	98	102	parallel
Strand 5	C	264	267	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	595	596	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	660	first strand
Strand 2	C	715	718	anti-parallel
Strand 3	C	706	708	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	89	first strand
Strand 2	D	141	147	parallel
Strand 3	D	176	181	parallel
Strand 4	D	50	55	parallel
Strand 5	D	203	204	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	408	first strand
Strand 2	D	427	429	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	70	first strand
Strand 2	E	120	126	parallel
Strand 3	E	153	159	parallel
Strand 4	E	36	40	parallel
Strand 5	E	176	179	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	416	420	first strand
Strand 2	E	431	434	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	633	first strand
Strand 2	A	678	684	parallel
Strand 3	A	711	717	parallel
Strand 4	A	592	598	parallel
Strand 5	A	739	742	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	852	853	first strand
Strand 2	A	903	906	anti-parallel
Strand 3	A	891	893	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	320	326	first strand
Strand 2	G	370	376	parallel
Strand 3	G	404	409	parallel
Strand 4	G	291	296	parallel
Strand 5	G	431	434	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	618	621	first strand
Strand 2	G	630	633	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JK3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JK3