Analysis of interatomic Contacts of Structural Units in PDB entry:
7JK4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JK4 entry

There are 9 chains in PDB entry 7JK4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PHE 276	GLU 616
C	MET 1	TRP 721
D	PRO 2	SER 456
E	MET 1	LEU 456
F	GLU 223	LYS 239
A	THR 519	VAL 919
G	ARG 249	LEU 660
H	A 1	T 34
I	A 35	T 68

There are139 helices in PDB entry 7JK4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	280	285	Right-handed alpha
Helix 2	AA2	B	324	339	Right-handed alpha
Helix 3	AA3	B	339	349	Right-handed alpha
Helix 4	AA4	B	361	372	Right-handed alpha
Helix 5	AA5	B	389	401	Right-handed alpha
Helix 6	AA6	B	410	424	Right-handed alpha
Helix 7	AA7	B	444	456	Right-handed alpha
Helix 8	AA8	B	470	474	Right-handed 310
Helix 9	AA9	B	476	483	Right-handed alpha
Helix 10	AB1	B	516	524	Right-handed alpha
Helix 11	AB2	B	527	545	Right-handed alpha
Helix 12	AB3	B	555	565	Right-handed alpha
Helix 13	AB4	B	570	584	Right-handed alpha
Helix 14	AB5	B	604	615	Right-handed alpha
Helix 15	AB6	C	41	46	Right-handed alpha
Helix 16	AB7	C	47	89	Right-handed alpha
Helix 17	AB8	C	106	109	Right-handed 310
Helix 18	AB9	C	110	124	Right-handed alpha
Helix 19	AC1	C	133	137	Right-handed 310
Helix 20	AC2	C	139	159	Right-handed alpha
Helix 21	AC3	C	184	196	Right-handed alpha
Helix 22	AC4	C	197	199	Right-handed 310
Helix 23	AC5	C	211	215	Right-handed 310
Helix 24	AC6	C	216	230	Right-handed alpha
Helix 25	AC7	C	245	253	Right-handed alpha
Helix 26	AC8	C	254	259	Right-handed alpha
Helix 27	AC9	C	270	282	Right-handed alpha
Helix 28	AD1	C	293	307	Right-handed alpha
Helix 29	AD2	C	310	327	Right-handed alpha
Helix 30	AD3	C	337	348	Right-handed alpha
Helix 31	AD4	C	350	358	Right-handed alpha
Helix 32	AD5	C	361	368	Right-handed alpha
Helix 33	AD6	C	373	380	Right-handed alpha
Helix 34	AD7	C	382	416	Right-handed alpha
Helix 35	AD8	C	425	436	Right-handed alpha
Helix 36	AD9	C	441	453	Right-handed alpha
Helix 37	AE1	C	455	477	Right-handed alpha
Helix 38	AE2	C	484	508	Right-handed alpha
Helix 39	AE3	C	563	576	Right-handed alpha
Helix 40	AE4	C	583	587	Right-handed 310
Helix 41	AE5	C	590	593	Right-handed 310
Helix 42	AE6	C	598	607	Right-handed alpha
Helix 43	AE7	C	609	620	Right-handed alpha
Helix 44	AE8	C	621	626	Right-handed alpha
Helix 45	AE9	C	643	654	Right-handed alpha
Helix 46	AF1	C	661	672	Right-handed alpha
Helix 47	AF2	C	688	703	Right-handed alpha
Helix 48	AF3	D	3	21	Right-handed alpha
Helix 49	AF4	D	30	47	Right-handed alpha
Helix 50	AF5	D	62	74	Right-handed alpha
Helix 51	AF6	D	75	77	Right-handed 310
Helix 52	AF7	D	95	107	Right-handed alpha
Helix 53	AF8	D	120	134	Right-handed alpha
Helix 54	AF9	D	148	153	Right-handed alpha
Helix 55	AG1	D	154	157	Right-handed 310
Helix 56	AG2	D	158	169	Right-handed alpha
Helix 57	AG3	D	191	198	Right-handed alpha
Helix 58	AG4	D	211	224	Right-handed alpha
Helix 59	AG5	D	227	244	Right-handed alpha
Helix 60	AG6	D	250	255	Right-handed 310
Helix 61	AG7	D	257	261	Right-handed 310
Helix 62	AG8	D	264	280	Right-handed alpha
Helix 63	AG9	D	281	295	Right-handed alpha
Helix 64	AH1	D	297	310	Right-handed alpha
Helix 65	AH2	D	320	333	Right-handed alpha
Helix 66	AH3	D	336	341	Right-handed alpha
Helix 67	AH4	D	344	362	Right-handed alpha
Helix 68	AH5	D	367	380	Right-handed alpha
Helix 69	AH6	D	389	403	Right-handed alpha
Helix 70	AH7	D	432	443	Right-handed alpha
Helix 71	AH8	D	447	456	Right-handed alpha
Helix 72	AH9	E	2	9	Right-handed alpha
Helix 73	AI1	E	15	26	Right-handed alpha
Helix 74	AI2	E	47	62	Right-handed alpha
Helix 75	AI3	E	76	89	Right-handed alpha
Helix 76	AI4	E	92	96	Right-handed 310
Helix 77	AI5	E	100	110	Right-handed alpha
Helix 78	AI6	E	127	134	Right-handed 310
Helix 79	AI7	E	137	143	Right-handed alpha
Helix 80	AI8	E	144	150	Right-handed alpha
Helix 81	AI9	E	162	166	Right-handed 310
Helix 82	AJ1	E	184	193	Right-handed alpha
Helix 83	AJ2	E	195	205	Right-handed alpha
Helix 84	AJ3	E	212	219	Right-handed alpha
Helix 85	AJ4	E	222	238	Right-handed alpha
Helix 86	AJ5	E	243	259	Right-handed alpha
Helix 87	AJ6	E	259	264	Right-handed alpha
Helix 88	AJ7	E	275	287	Right-handed alpha
Helix 89	AJ8	E	288	290	Right-handed 310
Helix 90	AJ9	E	322	338	Right-handed alpha
Helix 91	AK1	E	342	348	Right-handed alpha
Helix 92	AK2	E	381	394	Right-handed alpha
Helix 93	AK3	E	400	413	Right-handed alpha
Helix 94	AK4	E	437	449	Right-handed alpha
Helix 95	AK5	E	451	456	Right-handed 310
Helix 96	AK6	F	224	238	Right-handed alpha
Helix 97	AK7	A	520	529	Right-handed alpha
Helix 98	AK8	A	545	549	Right-handed 310
Helix 99	AK9	A	550	559	Right-handed alpha
Helix 100	AL1	A	571	588	Right-handed alpha
Helix 101	AL2	A	603	621	Right-handed alpha
Helix 102	AL3	A	641	652	Right-handed alpha
Helix 103	AL4	A	657	670	Right-handed alpha
Helix 104	AL5	A	685	690	Right-handed 310
Helix 105	AL6	A	694	703	Right-handed alpha
Helix 106	AL7	A	721	726	Right-handed alpha
Helix 107	AL8	A	728	736	Right-handed alpha
Helix 108	AL9	A	748	758	Right-handed alpha
Helix 109	AM1	A	765	778	Right-handed alpha
Helix 110	AM2	A	782	800	Right-handed alpha
Helix 111	AM3	A	806	818	Right-handed alpha
Helix 112	AM4	A	822	828	Right-handed alpha
Helix 113	AM5	A	830	848	Right-handed alpha
Helix 114	AM6	A	854	869	Right-handed alpha
Helix 115	AM7	A	874	888	Right-handed alpha
Helix 116	AM8	A	909	918	Right-handed alpha
Helix 117	AM9	G	250	260	Right-handed alpha
Helix 118	AN1	G	271	287	Right-handed alpha
Helix 119	AN2	G	302	311	Right-handed alpha
Helix 120	AN3	G	313	319	Right-handed alpha
Helix 121	AN4	G	332	334	Right-handed 310
Helix 122	AN5	G	335	345	Right-handed alpha
Helix 123	AN6	G	352	366	Right-handed alpha
Helix 124	AN7	G	377	382	Right-handed 310
Helix 125	AN8	G	386	394	Right-handed alpha
Helix 126	AN9	G	413	419	Right-handed alpha
Helix 127	AO1	G	420	425	Right-handed 310
Helix 128	AO2	G	439	454	Right-handed alpha
Helix 129	AO3	G	456	460	Right-handed 310
Helix 130	AO4	G	461	476	Right-handed alpha
Helix 131	AO5	G	478	498	Right-handed alpha
Helix 132	AO6	G	530	542	Right-handed alpha
Helix 133	AO7	G	557	574	Right-handed alpha
Helix 134	AO8	G	581	595	Right-handed alpha
Helix 135	AO9	G	601	614	Right-handed alpha
Helix 136	AP1	G	625	628	Right-handed 310
Helix 137	AP2	G	636	645	Right-handed alpha
Helix 138	AP3	G	646	655	Right-handed alpha
Helix 139	AP4	G	656	660	Right-handed 310

There are 13 sheets in PDB entry 7JK4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	488	first strand
Strand 2	B	352	355	parallel
Strand 3	B	460	465	parallel
Strand 4	B	430	435	parallel
Strand 5	B	377	382	parallel
Strand 6	C	11	14	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	597	600	anti-parallel
Strand 3	B	588	591	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	204	208	parallel
Strand 3	C	236	239	parallel
Strand 4	C	96	102	parallel
Strand 5	C	261	267	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	595	596	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	660	first strand
Strand 2	C	715	718	anti-parallel
Strand 3	C	706	708	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	89	first strand
Strand 2	D	141	147	parallel
Strand 3	D	176	180	parallel
Strand 4	D	50	55	parallel
Strand 5	D	203	204	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	408	first strand
Strand 2	D	427	429	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	70	first strand
Strand 2	E	121	126	parallel
Strand 3	E	153	159	parallel
Strand 4	E	36	40	parallel
Strand 5	E	176	179	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	416	418	first strand
Strand 2	E	432	434	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	633	first strand
Strand 2	A	678	684	parallel
Strand 3	A	711	717	parallel
Strand 4	A	592	598	parallel
Strand 5	A	739	742	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	851	853	first strand
Strand 2	A	903	906	anti-parallel
Strand 3	A	891	893	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	320	326	first strand
Strand 2	G	370	376	parallel
Strand 3	G	403	409	parallel
Strand 4	G	293	297	parallel
Strand 5	G	431	435	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	579	580	first strand
Strand 2	G	630	633	anti-parallel
Strand 3	G	618	621	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JK4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JK4