Analysis of interatomic Contacts of Structural Units in PDB entry:
7JK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JK5 entry

There are 8 chains in PDB entry 7JK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 328PHE 502
C
 SER 8LEU 719
D
 PRO 2SER 456
E
 MET 1TYR 455
F
 ASP 224GLN 237
A
 THR 519VAL 919
H
 G 2 T 33
I
 A 36 C 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are114 helices in PDB entry 7JK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
328 339Right-handed alpha
Helix 2
AA2
B
339 349Right-handed alpha
Helix 3
AA3
B
361 372Right-handed alpha
Helix 4
AA4
B
389 400Right-handed alpha
Helix 5
AA5
B
410 424Right-handed alpha
Helix 6
AA6
B
444 456Right-handed alpha
Helix 7
AA7
B
470 474Right-handed 310
Helix 8
AA8
B
476 483Right-handed alpha
Helix 9
AA9
B
497 502Right-handed alpha
Helix 10
AB1
C
41 46Right-handed alpha
Helix 11
AB2
C
47 88Right-handed alpha
Helix 12
AB3
C
107 122Right-handed alpha
Helix 13
AB4
C
133 137Right-handed 310
Helix 14
AB5
C
139 159Right-handed alpha
Helix 15
AB6
C
184 196Right-handed alpha
Helix 16
AB7
C
216 231Right-handed alpha
Helix 17
AB8
C
245 253Right-handed alpha
Helix 18
AB9
C
254 260Right-handed alpha
Helix 19
AC1
C
270 282Right-handed alpha
Helix 20
AC2
C
293 307Right-handed alpha
Helix 21
AC3
C
310 327Right-handed alpha
Helix 22
AC4
C
328 335Right-handed 310
Helix 23
AC5
C
337 348Right-handed alpha
Helix 24
AC6
C
350 358Right-handed alpha
Helix 25
AC7
C
361 368Right-handed alpha
Helix 26
AC8
C
376 381Right-handed alpha
Helix 27
AC9
C
382 416Right-handed alpha
Helix 28
AD1
C
425 436Right-handed alpha
Helix 29
AD2
C
437 440Right-handed 310
Helix 30
AD3
C
441 453Right-handed alpha
Helix 31
AD4
C
455 477Right-handed alpha
Helix 32
AD5
C
484 507Right-handed alpha
Helix 33
AD6
C
563 576Right-handed alpha
Helix 34
AD7
C
599 607Right-handed alpha
Helix 35
AD8
C
609 620Right-handed alpha
Helix 36
AD9
C
621 626Right-handed alpha
Helix 37
AE1
C
643 655Right-handed alpha
Helix 38
AE2
C
660 672Right-handed alpha
Helix 39
AE3
C
688 703Right-handed alpha
Helix 40
AE4
D
3 21Right-handed alpha
Helix 41
AE5
D
29 46Right-handed alpha
Helix 42
AE6
D
61 74Right-handed alpha
Helix 43
AE7
D
75 77Right-handed 310
Helix 44
AE8
D
78 82Right-handed alpha
Helix 45
AE9
D
95 107Right-handed alpha
Helix 46
AF1
D
120 135Right-handed alpha
Helix 47
AF2
D
148 154Right-handed alpha
Helix 48
AF3
D
155 157Right-handed 310
Helix 49
AF4
D
158 167Right-handed alpha
Helix 50
AF5
D
185 189Right-handed 310
Helix 51
AF6
D
191 198Right-handed alpha
Helix 52
AF7
D
211 224Right-handed alpha
Helix 53
AF8
D
227 243Right-handed alpha
Helix 54
AF9
D
257 261Right-handed 310
Helix 55
AG1
D
264 281Right-handed alpha
Helix 56
AG2
D
281 295Right-handed alpha
Helix 57
AG3
D
297 310Right-handed alpha
Helix 58
AG4
D
320 333Right-handed alpha
Helix 59
AG5
D
335 341Right-handed alpha
Helix 60
AG6
D
344 361Right-handed alpha
Helix 61
AG7
D
367 380Right-handed alpha
Helix 62
AG8
D
389 403Right-handed alpha
Helix 63
AG9
D
432 443Right-handed alpha
Helix 64
AH1
D
447 455Right-handed alpha
Helix 65
AH2
E
2 9Right-handed alpha
Helix 66
AH3
E
15 26Right-handed alpha
Helix 67
AH4
E
47 62Right-handed alpha
Helix 68
AH5
E
72 74Right-handed 310
Helix 69
AH6
E
76 89Right-handed alpha
Helix 70
AH7
E
92 96Right-handed 310
Helix 71
AH8
E
100 110Right-handed alpha
Helix 72
AH9
E
114 118Right-handed 310
Helix 73
AI1
E
127 131Right-handed 310
Helix 74
AI2
E
137 144Right-handed alpha
Helix 75
AI3
E
144 150Right-handed alpha
Helix 76
AI4
E
162 167Right-handed 310
Helix 77
AI5
E
184 195Right-handed alpha
Helix 78
AI6
E
195 204Right-handed alpha
Helix 79
AI7
E
212 221Right-handed alpha
Helix 80
AI8
E
222 235Right-handed alpha
Helix 81
AI9
E
236 240Right-handed 310
Helix 82
AJ1
E
243 259Right-handed alpha
Helix 83
AJ2
E
259 264Right-handed alpha
Helix 84
AJ3
E
275 287Right-handed alpha
Helix 85
AJ4
E
322 336Right-handed alpha
Helix 86
AJ5
E
342 347Right-handed alpha
Helix 87
AJ6
E
382 394Right-handed alpha
Helix 88
AJ7
E
400 413Right-handed alpha
Helix 89
AJ8
E
421 428Right-handed 310
Helix 90
AJ9
E
437 449Right-handed alpha
Helix 91
AK1
F
225 236Right-handed alpha
Helix 92
AK2
A
520 529Right-handed alpha
Helix 93
AK3
A
545 549Right-handed 310
Helix 94
AK4
A
550 559Right-handed alpha
Helix 95
AK5
A
571 588Right-handed alpha
Helix 96
AK6
A
603 621Right-handed alpha
Helix 97
AK7
A
635 637Right-handed 310
Helix 98
AK8
A
639 641Right-handed 310
Helix 99
AK9
A
642 650Right-handed alpha
Helix 100
AL1
A
657 670Right-handed alpha
Helix 101
AL2
A
686 690Right-handed 310
Helix 102
AL3
A
694 703Right-handed alpha
Helix 103
AL4
A
704 706Right-handed 310
Helix 104
AL5
A
721 727Right-handed alpha
Helix 105
AL6
A
746 758Right-handed alpha
Helix 106
AL7
A
767 778Right-handed alpha
Helix 107
AL8
A
782 800Right-handed alpha
Helix 108
AL9
A
806 818Right-handed alpha
Helix 109
AM1
A
821 828Right-handed alpha
Helix 110
AM2
A
830 848Right-handed alpha
Helix 111
AM3
A
854 869Right-handed alpha
Helix 112
AM4
A
874 888Right-handed alpha
Helix 113
AM5
A
895 899Right-handed 310
Helix 114
AM6
A
909 918Right-handed alpha
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There are 11 sheets in PDB entry 7JK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 382first strand
Strand 2
B
430 435parallel
Strand 3
B
460 464parallel
Strand 4
B
352 355parallel
Strand 5
B
485 488parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 101first strand
Strand 2
C
261 266parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 131first strand
Strand 2
C
204 209parallel
Strand 3
C
236 240parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
658 659first strand
Strand 2
C
716 718anti-parallel
Strand 3
C
706 708anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
83 88first strand
Strand 2
D
141 147parallel
Strand 3
D
176 181parallel
Strand 4
D
50 55parallel
Strand 5
D
203 204parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 113first strand
Strand 2
D
116 117anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
406 408first strand
Strand 2
D
427 429anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
68 70first strand
Strand 2
E
123 126parallel
Strand 3
E
155 159parallel
Strand 4
E
36 41parallel
Strand 5
E
176 180parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
380 381first strand
Strand 2
E
431 434anti-parallel
Strand 3
E
416 420anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 633first strand
Strand 2
A
679 684parallel
Strand 3
A
711 717parallel
Strand 4
A
592 597parallel
Strand 5
A
740 741parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
852 853first strand
Strand 2
A
903 906anti-parallel
Strand 3
A
891 893anti-parallel
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