Analysis of interatomic Contacts of Structural Units in PDB entry:
7JKQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JKQ entry

There are 4 chains in PDB entry 7JKQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 18	LEU 863
B	GLY 166	PRO 445
C	LEU 320	PRO 446
D	ASP 18	LEU 863

There are 43 helices in PDB entry 7JKQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	23	Right-handed 310
Helix 2	AA2	A	30	42	Right-handed alpha
Helix 3	AA3	A	44	49	Right-handed alpha
Helix 4	AA4	A	243	250	Right-handed alpha
Helix 5	AA5	A	341	346	Right-handed alpha
Helix 6	AA6	A	382	384	Right-handed 310
Helix 7	AA7	A	392	403	Right-handed alpha
Helix 8	AA8	A	446	450	Right-handed alpha
Helix 9	AA9	A	583	587	Right-handed 310
Helix 10	AB1	A	661	671	Right-handed alpha
Helix 11	AB2	A	686	691	Right-handed alpha
Helix 12	AB3	A	692	694	Right-handed 310
Helix 13	AB4	A	700	716	Right-handed alpha
Helix 14	AB5	A	730	743	Right-handed alpha
Helix 15	AB6	A	763	771	Right-handed alpha
Helix 16	AB7	A	777	785	Right-handed alpha
Helix 17	AB8	A	786	793	Right-handed 310
Helix 18	AB9	A	812	827	Right-handed alpha
Helix 19	AC1	A	844	863	Right-handed alpha
Helix 20	AC2	B	213	218	Right-handed alpha
Helix 21	AC3	B	262	264	Right-handed 310
Helix 22	AC4	B	317	321	Right-handed 310
Helix 23	AC5	B	348	360	Right-handed alpha
Helix 24	AC6	C	350	359	Right-handed alpha
Helix 25	AC7	C	360	362	Right-handed 310
Helix 26	AC8	D	19	23	Right-handed 310
Helix 27	AC9	D	30	42	Right-handed alpha
Helix 28	AD1	D	44	49	Right-handed alpha
Helix 29	AD2	D	243	250	Right-handed alpha
Helix 30	AD3	D	341	346	Right-handed alpha
Helix 31	AD4	D	382	384	Right-handed 310
Helix 32	AD5	D	392	403	Right-handed alpha
Helix 33	AD6	D	583	587	Right-handed 310
Helix 34	AD7	D	661	671	Right-handed alpha
Helix 35	AD8	D	686	691	Right-handed alpha
Helix 36	AD9	D	692	694	Right-handed 310
Helix 37	AE1	D	700	716	Right-handed alpha
Helix 38	AE2	D	730	743	Right-handed alpha
Helix 39	AE3	D	763	771	Right-handed alpha
Helix 40	AE4	D	777	785	Right-handed alpha
Helix 41	AE5	D	786	793	Right-handed 310
Helix 42	AE6	D	812	827	Right-handed alpha
Helix 43	AE7	D	844	863	Right-handed alpha

There are 30 sheets in PDB entry 7JKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	60	first strand
Strand 2	A	68	76	anti-parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	106	107	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	B	275	279	anti-parallel
Strand 3	B	266	271	anti-parallel
Strand 4	B	311	312	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	158	163	anti-parallel
Strand 4	A	178	180	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	193	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	208	213	anti-parallel
Strand 4	A	219	221	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	271	281	anti-parallel
Strand 3	A	256	258	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	271	281	anti-parallel
Strand 3	A	314	324	anti-parallel
Strand 4	A	330	338	anti-parallel
Strand 5	A	386	388	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	291	first strand
Strand 2	A	300	304	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	357	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	375	381	anti-parallel
Strand 4	A	410	416	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	445	first strand
Strand 2	A	453	459	anti-parallel
Strand 3	A	483	488	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	512	517	anti-parallel
Strand 3	A	505	507	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	512	517	anti-parallel
Strand 3	A	526	531	anti-parallel
Strand 4	A	539	540	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	552	first strand
Strand 2	A	558	564	anti-parallel
Strand 3	A	571	578	anti-parallel
Strand 4	A	588	596	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	614	first strand
Strand 2	A	620	626	anti-parallel
Strand 3	A	673	678	anti-parallel
Strand 4	A	637	643	parallel
Strand 5	A	719	729	parallel
Strand 6	A	749	753	parallel
Strand 7	A	800	805	parallel
Strand 8	A	831	835	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	174	first strand
Strand 2	B	179	184	anti-parallel
Strand 3	B	205	212	anti-parallel
Strand 4	B	234	238	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	197	201	anti-parallel
Strand 3	B	245	251	anti-parallel
Strand 4	B	288	292	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	334	first strand
Strand 2	B	337	345	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	398	first strand
Strand 2	B	381	386	anti-parallel
Strand 3	B	421	427	anti-parallel
Strand 4	B	434	441	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	332	first strand
Strand 2	C	339	345	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	399	first strand
Strand 2	C	380	386	anti-parallel
Strand 3	C	421	427	anti-parallel
Strand 4	C	434	441	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	68	76	anti-parallel
Strand 3	D	85	92	anti-parallel
Strand 4	D	106	107	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	145	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	158	163	anti-parallel
Strand 4	D	178	179	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	193	first strand
Strand 2	D	200	205	anti-parallel
Strand 3	D	208	213	anti-parallel
Strand 4	D	219	221	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	271	281	anti-parallel
Strand 3	D	256	258	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	271	281	anti-parallel
Strand 3	D	314	324	anti-parallel
Strand 4	D	330	338	anti-parallel
Strand 5	D	386	388	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	291	first strand
Strand 2	D	300	304	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	355	first strand
Strand 2	D	364	369	anti-parallel
Strand 3	D	375	381	anti-parallel
Strand 4	D	410	416	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	429	first strand
Strand 2	D	439	445	anti-parallel
Strand 3	D	453	459	anti-parallel
Strand 4	D	483	488	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	507	first strand
Strand 2	D	512	517	anti-parallel
Strand 3	D	526	531	anti-parallel
Strand 4	D	539	540	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	547	552	first strand
Strand 2	D	558	564	anti-parallel
Strand 3	D	571	578	anti-parallel
Strand 4	D	588	596	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	609	614	first strand
Strand 2	D	620	626	anti-parallel
Strand 3	D	673	678	anti-parallel
Strand 4	D	637	643	parallel
Strand 5	D	719	729	parallel
Strand 6	D	749	753	parallel
Strand 7	D	800	805	parallel
Strand 8	D	831	835	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JKQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JKQ