Analysis of interatomic Contacts of Structural Units in PDB entry:
7JL0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JL0 entry

There are 4 chains in PDB entry 7JL0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 G 1 A 14
Y
 U 1 C 14
A
 GLU 305GLU 1017
B
 PRO 321GLN 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 7JL0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
309 317Right-handed alpha
Helix 2
AA2
A
318 321Right-handed 310
Helix 3
AA3
A
334 353Right-handed alpha
Helix 4
AA4
A
365 375Right-handed alpha
Helix 5
AA5
A
376 381Right-handed alpha
Helix 6
AA6
A
399 407Right-handed alpha
Helix 7
AA7
A
414 422Right-handed alpha
Helix 8
AA8
A
445 448Right-handed 310
Helix 9
AA9
A
452 472Right-handed alpha
Helix 10
AB1
A
498 514Right-handed alpha
Helix 11
AB2
A
524 532Right-handed alpha
Helix 12
AB3
A
548 566Right-handed alpha
Helix 13
AB4
A
575 593Right-handed alpha
Helix 14
AB5
A
597 617Right-handed alpha
Helix 15
AB6
A
618 640Right-handed alpha
Helix 16
AB7
A
673 692Right-handed alpha
Helix 17
AB8
A
699 716Right-handed alpha
Helix 18
AB9
A
727 741Right-handed alpha
Helix 19
AC1
A
742 747Right-handed alpha
Helix 20
AC2
A
767 781Right-handed alpha
Helix 21
AC3
A
790 793Right-handed 310
Helix 22
AC4
A
813 822Right-handed alpha
Helix 23
AC5
A
840 862Right-handed alpha
Helix 24
AC6
A
865 895Right-handed alpha
Helix 25
AC7
A
933 939Right-handed alpha
Helix 26
AC8
A
983 985Right-handed 310
Helix 27
AC9
B
322 327Right-handed alpha
Helix 28
AD1
B
328 330Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 7JL0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
483 488parallel
Strand 3
A
439 443parallel
Strand 4
A
359 363parallel
Strand 5
A
409 413parallel
Strand 6
A
387 389parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 541first strand
Strand 2
A
829 834parallel
Strand 3
A
803 807parallel
Strand 4
A
721 724parallel
Strand 5
A
785 788parallel
Strand 6
A
751 754parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 916first strand
Strand 2
A
904 907anti-parallel
Strand 3
A
987 990anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 923first strand
Strand 2
A
927 930anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
940 942first strand
Strand 2
A
959 961anti-parallel
Strand 3
A
967 974anti-parallel
Strand 4
A
977 980anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 347first strand
Strand 2
B
352 355anti-parallel
Strand 3
B
496 499anti-parallel
Strand 4
B
384 390anti-parallel
Strand 5
B
451 456anti-parallel
Strand 6
B
461 466anti-parallel
Strand 7
B
472 478anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 374first strand
Strand 2
B
486 490anti-parallel
Strand 3
B
395 400anti-parallel
Strand 4
B
422 427anti-parallel
Strand 5
B
431 435anti-parallel
Strand 6
B
442 444anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il