Analysis of interatomic Contacts of Structural Units in PDB entry:
7JL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JL1 entry

There are 4 chains in PDB entry 7JL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 239PHE 918
X
 G 1 A 14
Y
 U 1 C 14
B
 GLN 256VAL 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7JL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 250Right-handed alpha
Helix 2
AA2
A
251 256Right-handed alpha
Helix 3
AA3
A
269 285Right-handed alpha
Helix 4
AA4
A
299 316Right-handed alpha
Helix 5
AA5
A
333 341Right-handed alpha
Helix 6
AA6
A
347 358Right-handed alpha
Helix 7
AA7
A
362 366Right-handed 310
Helix 8
AA8
A
373 377Right-handed 310
Helix 9
AA9
A
381 396Right-handed alpha
Helix 10
AB1
A
419 434Right-handed alpha
Helix 11
AB2
A
445 453Right-handed alpha
Helix 12
AB3
A
469 490Right-handed alpha
Helix 13
AB4
A
506 521Right-handed alpha
Helix 14
AB5
A
529 558Right-handed alpha
Helix 15
AB6
A
559 574Right-handed alpha
Helix 16
AB7
A
582 592Right-handed alpha
Helix 17
AB8
A
593 602Right-handed alpha
Helix 18
AB9
A
603 607Right-handed 310
Helix 19
AC1
A
608 625Right-handed alpha
Helix 20
AC2
A
636 649Right-handed alpha
Helix 21
AC3
A
674 686Right-handed alpha
Helix 22
AC4
A
698 701Right-handed 310
Helix 23
AC5
A
720 729Right-handed alpha
Helix 24
AC6
A
744 768Right-handed alpha
Helix 25
AC7
A
769 771Right-handed 310
Helix 26
AC8
A
774 794Right-handed alpha
Helix 27
AC9
A
821 823Right-handed 310
Helix 28
AD1
A
835 841Right-handed alpha
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There are 7 sheets in PDB entry 7JL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
343 346parallel
Strand 3
A
293 296parallel
Strand 4
A
369 371parallel
Strand 5
A
405 409parallel
Strand 6
A
260 263parallel
Strand 7
A
438 441parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 462first strand
Strand 2
A
737 742parallel
Strand 3
A
711 715parallel
Strand 4
A
630 633parallel
Strand 5
A
693 696parallel
Strand 6
A
658 661parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 667first strand
Strand 2
A
670 671anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
807 810anti-parallel
Strand 3
A
892 895anti-parallel
Strand 4
A
902 903anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
874 879first strand
Strand 2
A
882 887anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 274first strand
Strand 2
B
280 283anti-parallel
Strand 3
B
424 428anti-parallel
Strand 4
B
313 318anti-parallel
Strand 5
B
376 381anti-parallel
Strand 6
B
386 392anti-parallel
Strand 7
B
396 403anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 303first strand
Strand 2
B
411 416anti-parallel
Strand 3
B
325 330anti-parallel
Strand 4
B
347 351anti-parallel
Strand 5
B
357 361anti-parallel
Strand 6
B
364 368anti-parallel
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