Analysis of interatomic Contacts of Structural Units in PDB entry:
7JL3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JL3 entry

There are 3 chains in PDB entry 7JL3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 239	PHE 918
B	GLN 256	VAL 432
C	SER 239	GLN 708

There are 72 helices in PDB entry 7JL3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	244	257	Right-handed alpha
Helix 2	AA2	A	269	284	Right-handed alpha
Helix 3	AA3	A	299	314	Right-handed alpha
Helix 4	AA4	A	333	341	Right-handed alpha
Helix 5	AA5	A	347	358	Right-handed alpha
Helix 6	AA6	A	362	366	Right-handed 310
Helix 7	AA7	A	373	377	Right-handed 310
Helix 8	AA8	A	381	396	Right-handed alpha
Helix 9	AA9	A	419	434	Right-handed alpha
Helix 10	AB1	A	445	453	Right-handed alpha
Helix 11	AB2	A	469	490	Right-handed alpha
Helix 12	AB3	A	506	521	Right-handed alpha
Helix 13	AB4	A	529	558	Right-handed alpha
Helix 14	AB5	A	559	574	Right-handed alpha
Helix 15	AB6	A	582	602	Right-handed alpha
Helix 16	AB7	A	603	607	Right-handed 310
Helix 17	AB8	A	608	625	Right-handed alpha
Helix 18	AB9	A	636	649	Right-handed alpha
Helix 19	AC1	A	674	685	Right-handed alpha
Helix 20	AC2	A	698	701	Right-handed 310
Helix 21	AC3	A	720	729	Right-handed alpha
Helix 22	AC4	A	744	770	Right-handed alpha
Helix 23	AC5	A	775	795	Right-handed alpha
Helix 24	AC6	A	835	841	Right-handed alpha
Helix 25	AC7	C	244	257	Right-handed alpha
Helix 26	AC8	C	269	284	Right-handed alpha
Helix 27	AC9	C	299	314	Right-handed alpha
Helix 28	AD1	C	333	341	Right-handed alpha
Helix 29	AD2	C	347	358	Right-handed alpha
Helix 30	AD3	C	362	366	Right-handed 310
Helix 31	AD4	C	373	377	Right-handed 310
Helix 32	AD5	C	381	396	Right-handed alpha
Helix 33	AD6	C	419	434	Right-handed alpha
Helix 34	AD7	C	445	453	Right-handed alpha
Helix 35	AD8	C	469	490	Right-handed alpha
Helix 36	AD9	C	506	521	Right-handed alpha
Helix 37	AE1	C	529	558	Right-handed alpha
Helix 38	AE2	C	559	574	Right-handed alpha
Helix 39	AE3	C	582	602	Right-handed alpha
Helix 40	AE4	C	603	607	Right-handed 310
Helix 41	AE5	C	608	625	Right-handed alpha
Helix 42	AE6	C	636	649	Right-handed alpha
Helix 43	AE7	C	674	685	Right-handed alpha
Helix 44	AE8	C	698	701	Right-handed 310
Helix 45	AE9	C	720	729	Right-handed alpha
Helix 46	AF1	C	744	770	Right-handed alpha
Helix 47	AF2	C	775	795	Right-handed alpha
Helix 48	AF3	C	835	841	Right-handed alpha
Helix 49	AF4	E	244	257	Right-handed alpha
Helix 50	AF5	E	269	284	Right-handed alpha
Helix 51	AF6	E	299	314	Right-handed alpha
Helix 52	AF7	E	333	341	Right-handed alpha
Helix 53	AF8	E	347	358	Right-handed alpha
Helix 54	AF9	E	362	366	Right-handed 310
Helix 55	AG1	E	373	377	Right-handed 310
Helix 56	AG2	E	381	396	Right-handed alpha
Helix 57	AG3	E	419	434	Right-handed alpha
Helix 58	AG4	E	445	453	Right-handed alpha
Helix 59	AG5	E	469	490	Right-handed alpha
Helix 60	AG6	E	506	521	Right-handed alpha
Helix 61	AG7	E	529	558	Right-handed alpha
Helix 62	AG8	E	559	574	Right-handed alpha
Helix 63	AG9	E	582	602	Right-handed alpha
Helix 64	AH1	E	603	607	Right-handed 310
Helix 65	AH2	E	608	625	Right-handed alpha
Helix 66	AH3	E	636	649	Right-handed alpha
Helix 67	AH4	E	674	685	Right-handed alpha
Helix 68	AH5	E	698	701	Right-handed 310
Helix 69	AH6	E	720	729	Right-handed alpha
Helix 70	AH7	E	744	770	Right-handed alpha
Helix 71	AH8	E	775	795	Right-handed alpha
Helix 72	AH9	E	835	841	Right-handed alpha

There are 24 sheets in PDB entry 7JL3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	323	first strand
Strand 2	A	343	345	parallel
Strand 3	A	293	295	parallel
Strand 4	A	368	371	parallel
Strand 5	A	404	409	parallel
Strand 6	A	260	263	parallel
Strand 7	A	438	440	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	462	first strand
Strand 2	A	737	742	parallel
Strand 3	A	711	715	parallel
Strand 4	A	630	633	parallel
Strand 5	A	693	696	parallel
Strand 6	A	658	661	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	819	first strand
Strand 2	A	807	810	anti-parallel
Strand 3	A	892	895	anti-parallel
Strand 4	A	902	903	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	826	first strand
Strand 2	A	830	833	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	842	844	first strand
Strand 2	A	862	864	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	878	first strand
Strand 2	A	883	887	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	280	283	anti-parallel
Strand 3	B	424	428	anti-parallel
Strand 4	B	313	317	anti-parallel
Strand 5	B	375	381	anti-parallel
Strand 6	B	386	392	anti-parallel
Strand 7	B	397	402	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	410	416	anti-parallel
Strand 3	B	325	331	anti-parallel
Strand 4	B	347	352	anti-parallel
Strand 5	B	356	360	anti-parallel
Strand 6	B	365	368	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	323	first strand
Strand 2	C	343	345	parallel
Strand 3	C	293	295	parallel
Strand 4	C	368	371	parallel
Strand 5	C	404	409	parallel
Strand 6	C	260	263	parallel
Strand 7	C	438	440	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	462	first strand
Strand 2	C	737	742	parallel
Strand 3	C	711	715	parallel
Strand 4	C	630	633	parallel
Strand 5	C	693	696	parallel
Strand 6	C	658	661	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	816	819	first strand
Strand 2	C	807	810	anti-parallel
Strand 3	C	892	895	anti-parallel
Strand 4	C	902	903	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	823	826	first strand
Strand 2	C	830	833	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	842	844	first strand
Strand 2	C	862	864	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	874	878	first strand
Strand 2	C	883	887	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	274	first strand
Strand 2	D	280	283	anti-parallel
Strand 3	D	424	428	anti-parallel
Strand 4	D	313	317	anti-parallel
Strand 5	D	375	381	anti-parallel
Strand 6	D	386	392	anti-parallel
Strand 7	D	397	402	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	303	first strand
Strand 2	D	410	416	anti-parallel
Strand 3	D	325	331	anti-parallel
Strand 4	D	347	352	anti-parallel
Strand 5	D	356	360	anti-parallel
Strand 6	D	365	368	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	321	323	first strand
Strand 2	E	343	345	parallel
Strand 3	E	293	295	parallel
Strand 4	E	368	371	parallel
Strand 5	E	404	409	parallel
Strand 6	E	260	263	parallel
Strand 7	E	438	440	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	457	462	first strand
Strand 2	E	737	742	parallel
Strand 3	E	711	715	parallel
Strand 4	E	630	633	parallel
Strand 5	E	693	696	parallel
Strand 6	E	658	661	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	816	819	first strand
Strand 2	E	807	810	anti-parallel
Strand 3	E	892	895	anti-parallel
Strand 4	E	902	903	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	823	826	first strand
Strand 2	E	830	833	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	842	844	first strand
Strand 2	E	862	864	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	874	878	first strand
Strand 2	E	883	887	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	274	first strand
Strand 2	F	280	283	anti-parallel
Strand 3	F	424	428	anti-parallel
Strand 4	F	313	317	anti-parallel
Strand 5	F	375	381	anti-parallel
Strand 6	F	386	392	anti-parallel
Strand 7	F	397	402	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	303	first strand
Strand 2	F	410	416	anti-parallel
Strand 3	F	325	331	anti-parallel
Strand 4	F	347	352	anti-parallel
Strand 5	F	356	360	anti-parallel
Strand 6	F	365	368	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JL3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JL3