Analysis of interatomic Contacts of Structural Units in PDB entry:
7JL7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JL7 entry

There are 5 chains in PDB entry 7JL7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 38ASP 178
C
 GLU 190HIS 285
B
 ALA 37THR 177
D
 ARG 189PRO 282
F
 ASP 2ASP 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7JL7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed 310
Helix 2
AA2
A
69 84Right-handed alpha
Helix 3
AA3
A
95 108Right-handed alpha
Helix 4
AA4
A
139 144Right-handed alpha
Helix 5
AA5
A
145 147Right-handed 310
Helix 6
AA6
A
151 155Right-handed 310
Helix 7
AA7
C
219 232Right-handed alpha
Helix 8
AA8
C
236 252Right-handed alpha
Helix 9
AA9
B
59 63Right-handed 310
Helix 10
AB1
B
69 85Right-handed alpha
Helix 11
AB2
B
95 109Right-handed alpha
Helix 12
AB3
B
139 144Right-handed alpha
Helix 13
AB4
B
145 147Right-handed 310
Helix 14
AB5
B
151 155Right-handed 310
Helix 15
AB6
D
219 232Right-handed alpha
Helix 16
AB7
D
236 252Right-handed alpha
Helix 17
AB8
D
258 262Right-handed 310
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There are 7 sheets in PDB entry 7JL7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 92first strand
Strand 2
A
46 54parallel
Strand 3
A
114 122parallel
Strand 4
A
159 164parallel
Strand 5
C
198 202parallel
Strand 6
C
269 272anti-parallel
Strand 7
D
269 272anti-parallel
Strand 8
D
198 202anti-parallel
Strand 9
B
159 164parallel
Strand 10
B
114 122parallel
Strand 11
B
46 54parallel
Strand 12
B
87 92parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
129 131anti-parallel
Strand 3
A
136 138anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
D
191 192anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 192first strand
Strand 2
B
175 176anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 218first strand
Strand 2
C
211 213anti-parallel
Strand 3
F
3 4anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
129 131anti-parallel
Strand 3
B
136 138anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 213first strand
Strand 2
D
217 218anti-parallel
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