Analysis of interatomic Contacts of Structural Units in PDB entry:
7JLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JLM entry

There are 2 chains in PDB entry 7JLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 20ARG 255
B
 ARG 20ARG 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7JLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 29Right-handed alpha
Helix 2
AA2
A
41 49Right-handed alpha
Helix 3
AA3
A
52 75Right-handed alpha
Helix 4
AA4
A
87 91Right-handed 310
Helix 5
AA5
A
92 100Right-handed alpha
Helix 6
AA6
A
101 117Right-handed alpha
Helix 7
AA7
A
126 130Right-handed 310
Helix 8
AA8
A
131 145Right-handed alpha
Helix 9
AA9
A
160 178Right-handed alpha
Helix 10
AB1
A
182 186Right-handed 310
Helix 11
AB2
A
187 194Right-handed alpha
Helix 12
AB3
A
234 238Right-handed 310
Helix 13
AB4
A
239 253Right-handed alpha
Helix 14
AB5
B
22 28Right-handed alpha
Helix 15
AB6
B
41 49Right-handed alpha
Helix 16
AB7
B
52 75Right-handed alpha
Helix 17
AB8
B
87 91Right-handed 310
Helix 18
AB9
B
92 100Right-handed alpha
Helix 19
AC1
B
101 117Right-handed alpha
Helix 20
AC2
B
126 130Right-handed 310
Helix 21
AC3
B
131 145Right-handed alpha
Helix 22
AC4
B
160 178Right-handed alpha
Helix 23
AC5
B
182 186Right-handed 310
Helix 24
AC6
B
187 193Right-handed alpha
Helix 25
AC7
B
220 224Right-handed 310
Helix 26
AC8
B
234 238Right-handed 310
Helix 27
AC9
B
239 254Right-handed alpha
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There are 2 sheets in PDB entry 7JLM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
152 159parallel
Strand 3
A
78 85parallel
Strand 4
A
34 38parallel
Strand 5
A
205 208parallel
Strand 6
A
227 230parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
152 159parallel
Strand 3
B
78 85parallel
Strand 4
B
34 38parallel
Strand 5
B
205 208parallel
Strand 6
B
227 230parallel
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