Analysis of interatomic Contacts of Structural Units in PDB entry:
7JLS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JLS entry

There are 2 chains in PDB entry 7JLS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 30ALA 537
B
 SER 67ALA 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7JLS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed 310
Helix 2
AA2
A
49 60Right-handed alpha
Helix 3
AA3
A
105 118Right-handed alpha
Helix 4
AA4
A
119 122Right-handed 310
Helix 5
AA5
A
125 130Right-handed 310
Helix 6
AA6
A
134 139Right-handed alpha
Helix 7
AA7
A
173 182Right-handed 310
Helix 8
AA8
A
185 191Right-handed alpha
Helix 9
AA9
A
191 198Right-handed alpha
Helix 10
AB1
A
248 258Right-handed alpha
Helix 11
AB2
A
268 272Right-handed 310
Helix 12
AB3
A
274 280Right-handed alpha
Helix 13
AB4
A
304 318Right-handed alpha
Helix 14
AB5
A
320 328Right-handed alpha
Helix 15
AB6
A
353 358Right-handed 310
Helix 16
AB7
A
360 375Right-handed alpha
Helix 17
AB8
A
388 390Right-handed 310
Helix 18
AB9
A
391 407Right-handed alpha
Helix 19
AC1
A
417 427Right-handed alpha
Helix 20
AC2
A
444 448Right-handed 310
Helix 21
AC3
A
449 454Right-handed alpha
Helix 22
AC4
A
466 478Right-handed alpha
Helix 23
AC5
A
481 500Right-handed alpha
Helix 24
AC6
A
530 534Right-handed 310
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There are 7 sheets in PDB entry 7JLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
241 245parallel
Strand 3
A
221 226anti-parallel
Strand 4
A
205 209anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
241 245parallel
Strand 3
A
221 226anti-parallel
Strand 4
A
216 217anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
72 74anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
87 92anti-parallel
Strand 3
A
160 164anti-parallel
Strand 4
A
153 157anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
503 514anti-parallel
Strand 3
A
333 335anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
503 514anti-parallel
Strand 3
A
283 295anti-parallel
Strand 4
A
433 436anti-parallel
Strand 5
A
380 386parallel
Strand 6
A
409 415parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 519first strand
Strand 2
A
535 536anti-parallel
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