Analysis of interatomic Contacts of Structural Units in PDB entry:
7JLV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JLV entry

There are 4 chains in PDB entry 7JLV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 189	LEU 625
B	ASP 189	LEU 625
D	ASP 189	LEU 625
G	ASP 189	LEU 625

There are 80 helices in PDB entry 7JLV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	193	205	Right-handed alpha
Helix 2	AA2	A	224	236	Right-handed alpha
Helix 3	AA3	A	247	255	Right-handed alpha
Helix 4	AA4	A	256	269	Right-handed alpha
Helix 5	AA5	A	278	291	Right-handed alpha
Helix 6	AA6	A	304	312	Right-handed alpha
Helix 7	AA7	A	331	337	Right-handed alpha
Helix 8	AA8	A	349	362	Right-handed alpha
Helix 9	AA9	A	371	383	Right-handed alpha
Helix 10	AB1	A	385	396	Right-handed alpha
Helix 11	AB2	A	400	414	Right-handed alpha
Helix 12	AB3	A	416	428	Right-handed alpha
Helix 13	AB4	A	433	444	Right-handed alpha
Helix 14	AB5	A	449	460	Right-handed alpha
Helix 15	AB6	A	463	474	Right-handed alpha
Helix 16	AB7	A	487	500	Right-handed alpha
Helix 17	AB8	A	509	516	Right-handed alpha
Helix 18	AB9	A	522	526	Right-handed 310
Helix 19	AC1	A	540	546	Right-handed alpha
Helix 20	AC2	A	547	552	Right-handed alpha
Helix 21	AC3	B	193	205	Right-handed alpha
Helix 22	AC4	B	224	236	Right-handed alpha
Helix 23	AC5	B	247	255	Right-handed alpha
Helix 24	AC6	B	256	269	Right-handed alpha
Helix 25	AC7	B	278	291	Right-handed alpha
Helix 26	AC8	B	304	312	Right-handed alpha
Helix 27	AC9	B	331	337	Right-handed alpha
Helix 28	AD1	B	349	362	Right-handed alpha
Helix 29	AD2	B	371	383	Right-handed alpha
Helix 30	AD3	B	385	396	Right-handed alpha
Helix 31	AD4	B	400	414	Right-handed alpha
Helix 32	AD5	B	416	428	Right-handed alpha
Helix 33	AD6	B	433	444	Right-handed alpha
Helix 34	AD7	B	449	460	Right-handed alpha
Helix 35	AD8	B	463	474	Right-handed alpha
Helix 36	AD9	B	487	500	Right-handed alpha
Helix 37	AE1	B	509	516	Right-handed alpha
Helix 38	AE2	B	522	526	Right-handed 310
Helix 39	AE3	B	540	546	Right-handed alpha
Helix 40	AE4	B	547	552	Right-handed alpha
Helix 41	AE5	D	193	205	Right-handed alpha
Helix 42	AE6	D	224	236	Right-handed alpha
Helix 43	AE7	D	247	255	Right-handed alpha
Helix 44	AE8	D	256	269	Right-handed alpha
Helix 45	AE9	D	278	291	Right-handed alpha
Helix 46	AF1	D	304	312	Right-handed alpha
Helix 47	AF2	D	331	337	Right-handed alpha
Helix 48	AF3	D	349	362	Right-handed alpha
Helix 49	AF4	D	371	383	Right-handed alpha
Helix 50	AF5	D	385	396	Right-handed alpha
Helix 51	AF6	D	400	414	Right-handed alpha
Helix 52	AF7	D	416	428	Right-handed alpha
Helix 53	AF8	D	433	444	Right-handed alpha
Helix 54	AF9	D	449	460	Right-handed alpha
Helix 55	AG1	D	463	474	Right-handed alpha
Helix 56	AG2	D	487	500	Right-handed alpha
Helix 57	AG3	D	509	516	Right-handed alpha
Helix 58	AG4	D	522	526	Right-handed 310
Helix 59	AG5	D	540	546	Right-handed alpha
Helix 60	AG6	D	547	552	Right-handed alpha
Helix 61	AG7	G	193	205	Right-handed alpha
Helix 62	AG8	G	224	236	Right-handed alpha
Helix 63	AG9	G	247	255	Right-handed alpha
Helix 64	AH1	G	256	269	Right-handed alpha
Helix 65	AH2	G	278	291	Right-handed alpha
Helix 66	AH3	G	304	312	Right-handed alpha
Helix 67	AH4	G	331	337	Right-handed alpha
Helix 68	AH5	G	349	362	Right-handed alpha
Helix 69	AH6	G	371	383	Right-handed alpha
Helix 70	AH7	G	385	396	Right-handed alpha
Helix 71	AH8	G	400	414	Right-handed alpha
Helix 72	AH9	G	416	428	Right-handed alpha
Helix 73	AI1	G	433	444	Right-handed alpha
Helix 74	AI2	G	449	460	Right-handed alpha
Helix 75	AI3	G	463	474	Right-handed alpha
Helix 76	AI4	G	487	500	Right-handed alpha
Helix 77	AI5	G	509	516	Right-handed alpha
Helix 78	AI6	G	522	526	Right-handed 310
Helix 79	AI7	G	540	546	Right-handed alpha
Helix 80	AI8	G	547	552	Right-handed alpha

There are 8 sheets in PDB entry 7JLV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	244	first strand
Strand 2	A	295	299	parallel
Strand 3	A	323	328	parallel
Strand 4	A	212	217	parallel
Strand 5	A	341	344	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	531	first strand
Strand 2	A	559	562	parallel
Strand 3	A	582	585	parallel
Strand 4	A	604	607	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	295	299	parallel
Strand 3	B	323	328	parallel
Strand 4	B	212	217	parallel
Strand 5	B	341	344	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	531	first strand
Strand 2	B	559	562	parallel
Strand 3	B	582	585	parallel
Strand 4	B	604	607	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	244	first strand
Strand 2	D	295	299	parallel
Strand 3	D	323	328	parallel
Strand 4	D	212	217	parallel
Strand 5	D	341	344	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	531	first strand
Strand 2	D	559	562	parallel
Strand 3	D	582	585	parallel
Strand 4	D	604	607	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	241	244	first strand
Strand 2	G	295	299	parallel
Strand 3	G	323	328	parallel
Strand 4	G	212	217	parallel
Strand 5	G	341	344	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	529	531	first strand
Strand 2	G	559	562	parallel
Strand 3	G	582	585	parallel
Strand 4	G	604	607	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JLV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JLV