Analysis of interatomic Contacts of Structural Units in PDB entry:
7JM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JM2 entry

There are 3 chains in PDB entry 7JM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 272
B
 MET 1SER 273
C
 MET 1GLY 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 7JM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
25 33Right-handed alpha
Helix 3
AA3
A
54 64Right-handed alpha
Helix 4
AA4
A
65 70Right-handed 310
Helix 5
AA5
A
104 113Right-handed alpha
Helix 6
AA6
A
144 150Right-handed 310
Helix 7
AA7
A
151 165Right-handed alpha
Helix 8
AA8
A
168 172Right-handed 310
Helix 9
AA9
A
234 245Right-handed alpha
Helix 10
AB1
A
246 249Right-handed 310
Helix 11
AB2
A
250 257Right-handed alpha
Helix 12
AB3
A
257 263Right-handed alpha
Helix 13
AB4
A
263 272Right-handed alpha
Helix 14
AB5
B
3 13Right-handed alpha
Helix 15
AB6
B
25 32Right-handed alpha
Helix 16
AB7
B
54 64Right-handed alpha
Helix 17
AB8
B
65 70Right-handed 310
Helix 18
AB9
B
104 113Right-handed alpha
Helix 19
AC1
B
144 150Right-handed 310
Helix 20
AC2
B
151 165Right-handed alpha
Helix 21
AC3
B
168 172Right-handed 310
Helix 22
AC4
B
234 245Right-handed alpha
Helix 23
AC5
B
246 249Right-handed 310
Helix 24
AC6
B
250 257Right-handed alpha
Helix 25
AC7
B
257 263Right-handed alpha
Helix 26
AC8
B
263 272Right-handed alpha
Helix 27
AC9
C
3 13Right-handed alpha
Helix 28
AD1
C
25 33Right-handed alpha
Helix 29
AD2
C
54 64Right-handed alpha
Helix 30
AD3
C
65 68Right-handed 310
Helix 31
AD4
C
104 113Right-handed alpha
Helix 32
AD5
C
144 150Right-handed 310
Helix 33
AD6
C
151 164Right-handed alpha
Helix 34
AD7
C
168 172Right-handed 310
Helix 35
AD8
C
234 245Right-handed alpha
Helix 36
AD9
C
246 249Right-handed 310
Helix 37
AE1
C
250 257Right-handed alpha
Helix 38
AE2
C
257 263Right-handed alpha
Helix 39
AE3
C
263 272Right-handed alpha
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There are 15 sheets in PDB entry 7JM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
17 21parallel
Strand 3
A
48 52parallel
Strand 4
A
76 78parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
95 97anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
177 179parallel
Strand 3
A
198 199parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
184 185parallel
Strand 3
A
204 205parallel
Strand 4
A
219 222parallel
Strand 5
A
227 231anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
190 192parallel
Strand 3
A
210 211parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
17 21parallel
Strand 3
B
48 52parallel
Strand 4
B
76 78parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
95 97anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
177 179parallel
Strand 3
B
198 199parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
184 185parallel
Strand 3
B
204 205parallel
Strand 4
B
219 222parallel
Strand 5
B
227 231anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
190 192parallel
Strand 3
B
210 211parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 39first strand
Strand 2
C
17 21parallel
Strand 3
C
48 52parallel
Strand 4
C
76 78parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 92first strand
Strand 2
C
95 97anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 119first strand
Strand 2
C
177 179parallel
Strand 3
C
198 199parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 125first strand
Strand 2
C
184 185parallel
Strand 3
C
204 205parallel
Strand 4
C
219 222parallel
Strand 5
C
227 231anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 132first strand
Strand 2
C
190 192parallel
Strand 3
C
210 211parallel
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