Analysis of interatomic Contacts of Structural Units in PDB entry:
7JM4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JM4 entry

There are 8 chains in PDB entry 7JM4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	C 1	C 19
E	G 1	G 19
B	LYS 23	PRO 129
A	ASN 21	PRO 129
C	C 1	C 19
F	G 1	G 19
G	ASN 21	PRO 129
H	ASN 21	VAL 128

There are 12 helices in PDB entry 7JM4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	23	35	Right-handed alpha
Helix 2	AA2	B	63	79	Right-handed alpha
Helix 3	AA3	B	89	104	Right-handed alpha
Helix 4	AA4	A	23	35	Right-handed alpha
Helix 5	AA5	A	67	78	Right-handed alpha
Helix 6	AA6	A	89	104	Right-handed alpha
Helix 7	AA7	G	23	35	Right-handed alpha
Helix 8	AA8	G	63	79	Right-handed alpha
Helix 9	AA9	G	89	104	Right-handed alpha
Helix 10	AB1	H	23	35	Right-handed alpha
Helix 11	AB2	H	67	78	Right-handed alpha
Helix 12	AB3	H	89	104	Right-handed alpha

There are 4 sheets in PDB entry 7JM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	49	53	anti-parallel
Strand 3	B	122	127	anti-parallel
Strand 4	B	107	109	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	49	53	anti-parallel
Strand 3	A	122	127	anti-parallel
Strand 4	A	107	109	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	42	first strand
Strand 2	G	49	53	anti-parallel
Strand 3	G	122	127	anti-parallel
Strand 4	G	107	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	42	first strand
Strand 2	H	49	53	anti-parallel
Strand 3	H	122	127	anti-parallel
Strand 4	H	107	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JM4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JM4