Analysis of interatomic Contacts of Structural Units in PDB entry:
7JM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JM5 entry

There are 2 chains in PDB entry 7JM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6ARG 362
B
 GLY 7ARG 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7JM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 26Right-handed alpha
Helix 2
AA2
A
27 38Right-handed alpha
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
62 65Right-handed 310
Helix 5
AA5
A
95 103Right-handed alpha
Helix 6
AA6
A
114 125Right-handed alpha
Helix 7
AA7
A
158 165Right-handed alpha
Helix 8
AA8
A
191 195Right-handed 310
Helix 9
AA9
A
213 215Right-handed 310
Helix 10
AB1
A
216 228Right-handed alpha
Helix 11
AB2
A
237 242Right-handed 310
Helix 12
AB3
A
247 255Right-handed alpha
Helix 13
AB4
A
296 304Right-handed alpha
Helix 14
AB5
A
318 326Right-handed alpha
Helix 15
AB6
A
329 335Right-handed alpha
Helix 16
AB7
A
352 361Right-handed alpha
Helix 17
AB8
B
21 26Right-handed alpha
Helix 18
AB9
B
27 38Right-handed alpha
Helix 19
AC1
B
39 43Right-handed 310
Helix 20
AC2
B
95 103Right-handed alpha
Helix 21
AC3
B
114 125Right-handed alpha
Helix 22
AC4
B
158 166Right-handed alpha
Helix 23
AC5
B
191 195Right-handed 310
Helix 24
AC6
B
213 215Right-handed 310
Helix 25
AC7
B
216 225Right-handed alpha
Helix 26
AC8
B
238 242Right-handed 310
Helix 27
AC9
B
247 254Right-handed alpha
Helix 28
AD1
B
296 303Right-handed alpha
Helix 29
AD2
B
318 325Right-handed alpha
Helix 30
AD3
B
326 328Right-handed 310
Helix 31
AD4
B
329 335Right-handed alpha
Helix 32
AD5
B
352 360Right-handed alpha
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There are 6 sheets in PDB entry 7JM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
45 48parallel
Strand 3
A
268 271anti-parallel
Strand 4
A
196 204anti-parallel
Strand 5
A
285 292anti-parallel
Strand 6
A
176 180anti-parallel
Strand 7
A
132 138anti-parallel
Strand 8
A
72 79anti-parallel
Strand 9
A
82 89anti-parallel
Strand 10
A
244 246anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
93 94anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
276 281anti-parallel
Strand 3
A
207 212anti-parallel
Strand 4
A
259 263anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
45 48parallel
Strand 3
B
268 271anti-parallel
Strand 4
B
196 204anti-parallel
Strand 5
B
285 292anti-parallel
Strand 6
B
176 180anti-parallel
Strand 7
B
132 138anti-parallel
Strand 8
B
72 79anti-parallel
Strand 9
B
82 89anti-parallel
Strand 10
B
244 246anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
93 94anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 189first strand
Strand 2
B
277 281anti-parallel
Strand 3
B
207 211anti-parallel
Strand 4
B
259 263anti-parallel
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